DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and kcng4

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_002934997.1 Gene:kcng4 / 100497160 XenbaseID:XB-GENE-985941 Length:506 Species:Xenopus tropicalis


Alignment Length:428 Identity:135/428 - (31%)
Similarity:226/428 - (52%) Gaps:37/428 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 KLLINVSGRRFETWRNTLEKYPDTLLG-----SNEREFF-----YDEDCKEYFFDRDPDIFRHIL 96
            :::|||.|.::....:||:::|.|.||     |:..|..     :|||..|:||||:|..|..|:
 Frog    61 EIIINVGGIKYLMPWSTLDEFPMTRLGKLRFCSSYEEIIQICDDFDEDTNEFFFDRNPCAFSMIV 125

  Fly    97 NYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLMDDKLSENGD--- 158
            ::...|||...:..|..|:.:||.::||....:..||......:..|.||...:::...|.:   
 Frog   126 SFLAAGKLRLLREMCALSFQDELTYWGIEESKLERCCLRKLFQKLEELAEIRKEEEAQRNRETIC 190

  Fly   159 --QNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPC 221
              ::..::.:...|:....|||.:.....||..::..|:|.:.:...|.|:|........|  .|
 Frog   191 VLEDNTKVGHCMGKLRDMVENPQSGIPGKVFACLSIIFVATTAINLCVSTMPDLRAEEDRG--EC 253

  Fly   222 GER-YKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIGLGITDNDDV 285
            .:. |.|  |.::|.||..|:.|:.||...|..:|:|.:..::||||:||:|||:.|.:.|....
 Frog   254 SQMCYNI--FIIETICVAWFSLEFFLRFIQAKSKCQFFKGPLNIIDVLAILPYYVSLIVEDEQKT 316

  Fly   286 -----SGAFV--------TLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIII 337
                 |.:::        .||..|:..:.:.:|||.||:.||.|::.|..|.|.|:..|.:|:.:
 Frog   317 VDKPSSNSYLEKIGLVLRVLRALRILYVMRLARHSLGLQTLGLTVRRCTREFGLLLLFLCVAVTL 381

  Fly   338 FATVMFYAEKNVNG-TNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALP 401
            ||.::..||..:.. ..|||:||::|:.|::|||:|||||||.:|.|::|.....|||:|::|.|
 Frog   382 FAPLVHLAENEMGRCQEFTSVPASYWWAIISMTTVGYGDMVPRSIPGQVVALSSILSGILIMAFP 446

  Fly   402 VPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKAS 439
            ...|...|||.|.:.:|..:|   .::||.|::.|..|
 Frog   447 ATSIFHTFSRCYSELKREQER---LQSRLMRLKDANQS 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 34/111 (31%)
Ion_trans 188..415 CDD:459842 84/241 (35%)
DUF3399 471..535 CDD:463381
kcng4XP_002934997.1 BTB_POZ_KCNG4 59..170 CDD:349730 34/108 (31%)
Ion_trans 219..462 CDD:459842 86/246 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.