DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnc2

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_002939991.2 Gene:kcnc2 / 100489216 XenbaseID:XB-GENE-1013657 Length:598 Species:Xenopus tropicalis


Alignment Length:154 Identity:41/154 - (26%)
Similarity:62/154 - (40%) Gaps:31/154 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 EEVRKLASKMMEVMDENLGLPKGYIKKAFNEGMEDGEETAFFGTKVSHYPPCPHPELVNGLRAH- 180
            ||:.::..|.|:...:.:.:........|......||:..|||.:  ||        ..||... 
 Frog     6 EEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCR--HY--------TTGLTLMD 60

  Fly   181 -TDAGGVVLLFQDDEYD-GLQVLKDGEWIDVQPLPNAIVINTGDQI-----EVLSNGRYKSAWHR 238
             .|..|...|   ||.| |||    |:..:.|.|.|  |.:||:.|     |:..:|.::...|:
 Frog    61 ILDTDGDKWL---DELDSGLQ----GQKAEFQILDN--VDSTGELIVRLPKEITISGSFQGFHHQ 116

  Fly   239 VLAREEGNRRS---IASFYNPSYK 259
            .:...| ||.|   :|:..|...|
 Frog   117 KIKISE-NRISQQYLATLENRKLK 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 4/26 (15%)
Ion_trans 188..415 CDD:459842 25/81 (31%)
DUF3399 471..535 CDD:463381
kcnc2XP_002939991.2 BTB_KCNC2_4 7..129 CDD:349722 37/141 (26%)
Ion_trans 191..447 CDD:459842
Blue background indicates that the domain is not in the aligned region.

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