DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnv1

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_002939028.1 Gene:kcnv1 / 100487006 XenbaseID:XB-GENE-956997 Length:503 Species:Xenopus tropicalis


Alignment Length:487 Identity:157/487 - (32%)
Similarity:245/487 - (50%) Gaps:71/487 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 PMPKDRRKTDDEKLLINVSGRRFETWRNTLEKYPDTLLG----SNEREFFYDEDC-------KEY 83
            |.|||.       |.|||.|.||......|..:|:|.||    |..:|.:  |.|       .||
 Frog    55 PAPKDH-------LTINVGGSRFILSHKVLSNHPETRLGRLVSSGGQEVY--ELCDDANLMDNEY 110

  Fly    84 FFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRK--RENAE 146
            ||||...:|::|:|:|:||.||..:..|..|:.:|:.::||....|..||.|.|..:|  .|:.:
 Frog   111 FFDRSSQMFKYIMNFYKTGHLHVMEELCAVSFLQEIQYWGIDELNIDLCCRERYYRKKLMSESLD 175

  Fly   147 RLMDDKLSENGDQNLQQLT--NMRQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMANVVETVPC 209
            ...|::..|..:::...:.  :.||.:|...|.|.:|.:|..|..::..||.:|: ||:|     
 Frog   176 IKKDEEEIEAEEEDFSGVVFEHFRQTLWDILEKPGSSVAAKTFGTLSMTFIVISI-ANMV----- 234

  Fly   210 GHRPGRAGTLPCGERYKI---VFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIM 271
                     |...|...|   :...|:..|:..||.|..||......:|:|:|||::|||:|||:
 Frog   235 ---------LISSEMNSIDPPLLNALEYICITWFTLELALRFLCVKHKCRFLRSVVNIIDIVAIL 290

  Fly   272 PYYIGLGI-------TDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVF 329
            |:||.|.:       |:.::|.....:||:.|..|:.|..|||.||:.||.|:..|..|:|.|:.
 Frog   291 PFYITLIVENLYGESTELENVGRIVQSLRLLRSLRMLKLGRHSTGLKSLGMTIAQCYEEVGLLLL 355

  Fly   330 SLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSG 394
            .|::.|.||:.:.:..|.|:..|.|||:|.|:|:...:|||:||||:.|:|..||||..:|.|||
 Frog   356 FLSVGISIFSALEYAVEHNIPDTTFTSVPNAWWWATTSMTTVGYGDIRPDTTFGKIVAFLCILSG 420

  Fly   395 VLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSKKKAAEARWAAQE 459
            :||:|||:.:|...|:..|...:..:....||:|                  .||..:...|..:
 Frog   421 ILVLALPIAIINDRFAACYFTLKIKEAALRQREA------------------LKKLMKNISAESD 467

  Fly   460 SGIELDDNYRDEDIFELQHHHLLRCLEKTTDR 491
            :.:.|.|.|. :.:.|:..   |:..|:.:.|
 Frog   468 TNVNLRDIYA-KSVMEMLR---LKSRERASTR 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 45/126 (36%)
Ion_trans 188..415 CDD:459842 88/236 (37%)
DUF3399 471..535 CDD:463381 4/21 (19%)
kcnv1XP_002939028.1 BTB_POZ_KCNV1 61..169 CDD:349731 40/109 (37%)
Ion_trans 215..439 CDD:459842 89/238 (37%)

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