DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnf1b

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_005157014.1 Gene:kcnf1b / 100334378 ZFINID:ZDB-GENE-090312-39 Length:484 Species:Danio rerio


Alignment Length:465 Identity:143/465 - (30%)
Similarity:241/465 - (51%) Gaps:57/465 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 MPKDR-------RKTDDEKLLINVSGRRFETWRNTLEKYPDT----LLGSNEREF--------FY 76
            :|:.|       ..:|::::.:|:.|.|.....:.|.:|||:    |:....|.|        .|
Zfish     4 LPRTRFAHCNSSSSSDEKEIAVNIGGVRLVLCGDILNRYPDSRLAELVNCPTRSFDVISSLCDDY 68

  Fly    77 DEDCKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRK 141
            |...:|::||||||.|:.|:..|..|::|..:..|...:.:|:.|:.|....:.:||..:..:::
Zfish    69 DPGKREFYFDRDPDSFKCIVEVYYFGEVHMKRGICPICFIKEMEFWKIDLSYLDECCKSNLTEKE 133

  Fly   142 RENAE-----RLMDDKLSENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMA 201
            .|.||     :|:.|.|  ..|..:.:....::.:|:..|.|.:|..|.|...|:..||.:|   
Zfish   134 EELAEIADKVKLILDDL--ECDPAVSRTERWQKFVWKLMEKPESSLPARVIAVVSFLFILIS--- 193

  Fly   202 NVVETVPCGHRPGRAGTLPC-------GERYKIVFF-CLDTACVMIFTAEYLLRLFAAPDRCKFV 258
               ..|.|      .||||.       |.|.:.... .::|||:..||.||:|||.::|::.:|.
Zfish   194 ---SVVMC------LGTLPDLQVEDSEGNRVEHPSLDAIETACIGWFTVEYVLRLASSPNKLRFA 249

  Fly   259 RSVMSIIDVVAIMPYYI-------GLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYT 316
            .|.|::||.:|::|:|:       |..:.:..:|..|...||:.|:.||||.:|||.||:.|.|.
Zfish   250 LSFMNMIDFLAVLPFYVVLVLTCLGTAMMELVNVQQAVQALRIMRIARIFKLARHSSGLQTLTYA 314

  Fly   317 LKSCASELGFLVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETI 381
            ||....|||.|:..:.:.|.:|:.:.:..|::...|.|.|||.:||:.|:||||:||||:.|:|.
Zfish   315 LKRSFKELGLLLMYMGVGIFVFSALGYTMEQSHPETLFRSIPQSFWWAIITMTTVGYGDIYPKTT 379

  Fly   382 AGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVS 446
            .|:....:..|.||:.||||:..|::||. ||:..|:..:..|:.:..|..:|..:.:..:|  |
Zfish   380 LGRCNAAISFLCGVIAIALPIHPIINNFV-IYYNKQKVLETAAKHELELMELRALELTVRSA--S 441

  Fly   447 KKKAAEAR-W 455
            ::..|..| |
Zfish   442 RRSDAPGRAW 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 33/131 (25%)
Ion_trans 188..415 CDD:459842 88/241 (37%)
DUF3399 471..535 CDD:463381
kcnf1bXP_005157014.1 BTB_POZ_Kv5_KCNF1 22..136 CDD:349690 30/113 (27%)
Ion_trans 179..415 CDD:459842 90/248 (36%)
Blue background indicates that the domain is not in the aligned region.

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