DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnf1

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_001096396.1 Gene:kcnf1 / 100124998 XenbaseID:XB-GENE-979363 Length:484 Species:Xenopus tropicalis


Alignment Length:488 Identity:151/488 - (30%)
Similarity:245/488 - (50%) Gaps:68/488 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TDDEKLLINVSGRRFETWRNTLEKYPDTLL--------GSNEREFF----YDEDCKEYFFDRDPD 90
            :::.::.:||.|.|...:.:.|.:||:|.|        |..:..|.    ||...||::||||||
 Frog    18 SEEVEITVNVGGIRQVLYGDVLNRYPETRLAELVNCMAGGYDAIFSLCDDYDPGKKEFYFDRDPD 82

  Fly    91 IFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRE------NAERLM 149
            .|:.|:..|..|::|..|..|...:..|:.|:.:..|::.|||.....::..|      ..:.::
 Frog    83 AFKCIIEVYLYGEVHMKKGICPICFKNEMDFWRVDLDLLDDCCKSHLNEKNLELEEIAKRVQTIL 147

  Fly   150 DDKLSENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMANVVETVPCGHRPG 214
            ||.   .||.:..:....::.:|:..|.|.:|..|.:...::..||.:|      .||.|     
 Frog   148 DDL---GGDTSESKWKRFQKCLWKFMEKPESSFPARITAILSFLFILIS------STVMC----- 198

  Fly   215 RAGTLPCGERYKI--------VFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIM 271
             .||:|..:...:        ....::|.|:..||.||||||.::|:|..|..|.|:||||:||:
 Frog   199 -IGTIPEMQVEDLQGNHVEHPTLDSIETVCIGWFTLEYLLRLISSPNRLHFALSFMNIIDVLAIL 262

  Fly   272 PYYIG----------LGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGF 326
            |:|:.          :|:|   :|..|...||:.|:.||||.:|||.||:.|.|.|||...|||.
 Frog   263 PFYVSIILTNLGATIMGLT---NVQQAIQALRIMRIARIFKLARHSSGLQTLTYALKSSFKELGL 324

  Fly   327 LVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCS 391
            |:..||:.|.:|:.:.:..|::...|.|.|||.:||:.|:||||:||||:.|:|..||:......
 Frog   325 LLMYLAVGIFVFSALGYTMEQSHPDTLFKSIPQSFWWAIITMTTVGYGDIYPKTTLGKLNAATSF 389

  Fly   392 LSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFV----SKKKAAE 452
            |.||:.||||:..|::||.:.|      :|::....|....:.:.:..|...::    |.|:.:|
 Frog   390 LCGVIAIALPIHPIINNFVKYY------NKQRVLETATKHELELMELHSNGGYLGTNGSSKELSE 448

  Fly   453 ARWAAQESGIELDDNYRDEDIFEL--QHHHLLR 483
            .|  ....|..:..::.|..|..|  :.||..|
 Frog   449 GR--GLSVGAHMKVSHSDTFIQALTEEKHHRTR 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 35/123 (28%)
Ion_trans 188..415 CDD:395416 93/244 (38%)
DUF3399 445..540 CDD:403174 11/45 (24%)
kcnf1NP_001096396.1 BTB 23..124 CDD:321966 31/100 (31%)
Ion_trans 179..415 CDD:306908 95/256 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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