DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnc2

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_001082998.2 Gene:kcnc2 / 100037377 ZFINID:ZDB-GENE-070410-118 Length:597 Species:Danio rerio


Alignment Length:603 Identity:183/603 - (30%)
Similarity:297/603 - (49%) Gaps:107/603 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 KTDD-EKLLINVSGRRFETWRNTLEKYPDT----LLGSNEREFFYDE------------DCKEYF 84
            |.|: |::::||.|.|.||:|:||:..|.|    |...::.|...|:            ...|||
Zfish     3 KFDERERVILNVGGTRHETYRSTLKTLPGTRLALLASESDLELVLDQLQQVPGFIEYSARSNEYF 67

  Fly    85 FDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLM 149
            |||.|.:|.::||||||||||.|...|...::|||:|:||....:..||:..||..:  :||..:
Zfish    68 FDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELSFWGIDETDVEPCCWMTYRQHR--DAEEAL 130

  Fly   150 D---------------------DKLSENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGF 193
            |                     |.:|.:|  .:.:....:..:|..|::|::|.:|....:.:.|
Zfish   131 DVFEMNVDTEEDDEYGKRLGIEDVVSADG--TVSRWRRWQPVIWNLFDDPYSSRAARFIAFASLF 193

  Fly   194 FIAVSVMANVVETVPCGHR----------PGRAGTL-PCGERYKI----VFFCLDTACVMIFTAE 243
            ||.||:....:||    |.          |.|..|| ...::|:|    ....::..||:.||.|
Zfish   194 FIMVSITTFCLET----HEAFNTIINKTDPLRNETLTDISQQYEIETDPALTYVEGVCVLWFTFE 254

  Fly   244 YLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIGLGITD-----NDDVSGAFVTLRVFRVFRIFKF 303
            :|:|:..:||:.:|::||::|||.|||:|:|:.:|::.     ..||.|....:|..|:.||||.
Zfish   255 FLVRITFSPDKLEFIKSVLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKL 319

  Fly   304 SRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEK---------NVNGTNFTSIPA 359
            :||..|||:||:||::..:|...|:..||:.::||||:::|||:         ..:.|.|.:||.
Zfish   320 TRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGASPNDPTASHHTMFKNIPI 384

  Fly   360 AFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKA 424
            .||:.:|||||||||||.|:|.:|.:||.:|:|:|||.||:||||||:||...|.......|...
Zfish   385 GFWWAVVTMTTLGYGDMYPQTWSGMVVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPK 449

  Fly   425 QRKARLARIRIAKASSGAAFVSKKKAAEA-------RWAAQESGIELDDNYRDEDIFELQHHHLL 482
            :||..:.:    ...:|:....:...:.|       ....|..|:|   .:|..:  .|.|.|.:
Zfish   450 KRKKHIPQ----AVQTGSPLYCRTDLSTACNSTQGELCIGQSRGLE---RHRSGE--TLVHLHAV 505

  Fly   483 RCLEKTTDREFVELEIPFNGQPKRPGSPSPMASPAHSTNSAAGLLQSCCGRCCSQRYQACGKYMP 547
            ...:.:...     :|..:.:.:.|...|.:....|.|.....||......|.:.          
Zfish   506 LSADCSAGS-----DISMSPEERMPMRHSSVREQDHHTEGTCFLLAPSDYTCTAD---------- 555

  Fly   548 AASNAQNSQNNQPMDGTY 565
             |:..:.|:.::.::..|
Zfish   556 -AAIRKGSEKSRSLNNVY 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 47/123 (38%)
Ion_trans 188..415 CDD:395416 102/255 (40%)
DUF3399 445..540 CDD:403174 16/101 (16%)
kcnc2NP_001082998.2 amino terminal assembly domain 1..185 57/185 (31%)
BTB 10..123 CDD:197585 44/112 (39%)
BTB_2 10..115 CDD:280393 40/104 (38%)
S1-S6 membrane domain 186..504 113/330 (34%)
Ion_trans 235..442 CDD:278921 88/206 (43%)
Ion_trans_2 <385..432 CDD:285168 30/46 (65%)
post S6 proximal carboxyl terminal domain 505..560 9/70 (13%)
distal carboxyl terminus 561..597 2/12 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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