DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9279 and CLIP-190

DIOPT Version :9

Sequence 1:NP_649124.1 Gene:CG9279 / 40124 FlyBaseID:FBgn0036882 Length:1339 Species:Drosophila melanogaster
Sequence 2:NP_001368962.1 Gene:CLIP-190 / 35042 FlyBaseID:FBgn0020503 Length:1795 Species:Drosophila melanogaster


Alignment Length:1616 Identity:356/1616 - (22%)
Similarity:611/1616 - (37%) Gaps:419/1616 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LGQRVEVTGKNLQGKVAYVGRTNFAAGLWYGVVLDEPLGKNNGSVHGSIYFKCPTNCGLFVRAQQ 73
            :||||.:.|.. .|::|::|.|:||||.|.|||||||.|||:|.|.|..||:|....|:|.|   
  Fly   125 IGQRVWLGGTR-PGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCEPKRGIFSR--- 185

  Fly    74 LVRIAELPKGGDNRKADEMQRD------------GARAKLSRRSG----SGKSVEEQDNQREQQA 122
            |.|:...|..|.......:.:.            ..|:.:.|..|    :|.:|.::........
  Fly   186 LTRLTTYPLAGAQTPTSPLAKSSPDRSRTVSPTASIRSSMLRSPGIGGKNGMAVGDRVIVSSGFG 250

  Fly   123 STSGKVKATSST------------PSPQHKNRNT-------------------------HSSMET 150
            |..|.::....|            ..|..||..|                         .||.:|
  Fly   251 SRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKVSLSPSSKKT 315

  Fly   151 SLAKTSGKFLATHQQPLQLPKNPV--TCESSVR-NSQSKETG----EVTLSPKKSSDIEQSKKHS 208
            .|::|..:...|....:    |.:  |..|.:| |:|.:::.    .:..:||....::...:..
  Fly   316 RLSRTGSRESLTSIGTM----NSIATTATSRMRMNAQQRKSSTPVKPILATPKSQFSMQDLLREK 376

  Fly   209 QQETNETNQPASKEVEPKNENELQSTEAANSML---DTPVNPLQTSTIGQ-LPPQKASAQLTPP- 268
            ||...:.......:.|......||..:..|.::   ||...||..:...: ..|.|.|....|. 
  Fly   377 QQHVEKLMVERDLDREDAQNQALQLQKNINEVIIFTDTMYAPLPYADRSRPYRPSKKSRVKVPQQ 441

  Fly   269 -----PLTCNQRRSTSYTQLRPTRISQPKPTTAQAQSSTAQLTLAMPVPL-------------AL 315
                 |.|.:...:||         :..:||.|.|.::.|........||             ..
  Fly   442 QHIWVPTTLSSSITTS---------TSTRPTIAAATAAAAAAAACNRQPLQQQQQPHLHQKQQQA 497

  Fly   316 APKR----SKTSMSPTSS-IKRVAPAAFVEPRFLEILR-----PQFTPGPALR------------ 358
            .||:    .|..:.|..: |..:..|...|.:..|.|:     .||. |..|.            
  Fly   498 KPKKVWFCDKKKLFPLKARIVELESALDNERKKTEELQCSIDEAQFC-GDELNAQSQVYKEKIHD 561

  Fly   359 -----------TPS--SVAPPLDNP--------ELRQLREELQLLRGQKSEDKLKLLE------- 395
                       |||  |:.|| |.|        |:.:|:|::.:   |:.|.:.::.|       
  Fly   562 LESKITKLVSATPSLQSILPP-DLPSDDGALQEEIAKLQEKMTI---QQKEVESRIAEQLEEEQR 622

  Fly   396 -LERMRIHNEQLMEFKSQIMAQQVLLQ-------------RELQRSRHE-LREAQDVSSKLKREL 445
             .|.::..|||:...:|:::::...|:             |||:..:.| .::||:..::..|:|
  Fly   623 LRENVKYLNEQIATLQSELVSKDEALEKFSLSECGIENLRRELELLKEENEKQAQEAQAEFTRKL 687

  Fly   446 DEIAESIELLTLDKEMAEERMETLQMELEMAQERNDELSLDVEI-LKAEQEEQQGQRIEKSEKQI 509
            .|  :|:|:|.|..|:...:..:..:|.|...:.::...|..|: ::.||..:..|::::...|:
  Fly   688 AE--KSVEVLRLSSELQNLKATSDSLESERVNKTDECEILQTEVRMRDEQIRELNQQLDEVTTQL 750

  Fly   510 GSGVTNQSA-GEFLRLEQYNQRLRETVV-RLRDTLAEEKQIGQRTHKELETKHSEINELKSIKE- 571
            .....:.|| .:.|||::.....:.|:: :....|.:.|:...:|..:.|....:|::||.:.| 
  Fly   751 NVQKADSSALDDMLRLQKEGTEEKSTLLEKTEKELVQSKEQAAKTLNDKEQLEKQISDLKQLAEQ 815

  Fly   572 --LLSRRVDNMEMQLMDLKEQVDASLGAEAMVTQLASLKLELED-RVKLLEDEVNELEALEQIQE 633
              |:....:|...|:...||.::         .|||..:.|||| :.|..|.||:    |::|:.
  Fly   816 EKLVREMTENAINQIQLEKESIE---------QQLALKQNELEDFQKKQSESEVH----LQEIKA 867

  Fly   634 Q-------LIESNQELETDLREEID-KLSGHVKILEQQKNAAMESLYDRDVTIMKFRDL-VRQLQ 689
            |       |:||.:.|: .|::::: |..||.|:     .||:|.|.....||:|.::. ::|||
  Fly   868 QNTQKDFELVESGESLK-KLQQQLEQKTLGHEKL-----QAALEELKKEKETIIKEKEQELQQLQ 926

  Fly   690 -----------------EQLQLRA-----DGTLSI---EDFSSANESQQEDGSNQSQTDYQHIFS 729
                             ||||.:|     :|:.::   .|..|..:||.|:..::.::...::.:
  Fly   927 SKSAESESALKVVQVQLEQLQQQAAASGEEGSKTVAKLHDEISQLKSQAEETQSELKSTQSNLEA 991

  Fly   730 VSK---AYGRALEQQIKTVELRLQRQH-LEHVLAFVPE----QFLLRGGEHDVVLVMLLLERMNE 786
            .||   |...:||::.|      :..| ||.:.....|    |..|.....||......||..|.
  Fly   992 KSKQLEAANGSLEEEAK------KSGHLLEQITKLKSEVGETQAALSSCHTDVESKTKQLEAANA 1050

  Fly   787 KLTIVCQAINEKFPTACEFGRD------AIFEGYSVQRYIFRSQCLYLLKSLQLVLQQFRHGLTH 845
            .|    :.:|:::..:.....|      .|.:....:....||..    .:|...|.:|...:..
  Fly  1051 AL----EKVNKEYAESRAEASDLQDKVKEITDTLHAELQAERSSS----SALHTKLSKFSDEIAT 1107

  Fly   846 CDYELCTHAAIYRSDL---------------DAQEQQ--------------------LDEFVRLL 875
            ...||.:.|..:..::               |:|:.|                    |.|.|...
  Fly  1108 GHKELTSKADAWSQEMLQKEKELQELRQQLQDSQDSQTKLKAEGERKEKSFEESIKNLQEEVTKA 1172

  Fly   876 KTGQLD----EHTNCEPIQRVLHYVSG--LHQNLMPPQTLVELLDEQQLYEALIEVYEAGLDAVN 934
            ||..|:    ..|..:.:|..|...:.  .|:..|..:...::.|.:.|.|| |:|..|.:.|.|
  Fly  1173 KTENLELSTGTQTTIKDLQERLEITNAELQHKEKMASEDAQKIADLKTLVEA-IQVANANISATN 1236

  Fly   935 ANAGLMHTIIQLGHEQTAS-FSCMQM--------LMEQSCAHKQKLKKLQRKLSGSKTASWTGMQ 990
            |....:..::|....:|.. |...:|        |:|:....|::||:...:|.           
  Fly  1237 AELSTVLEVLQAEKSETNHIFELFEMEADMNSERLIEKVTGIKEELKETHLQLD----------- 1290

  Fly   991 CARYQRIMEANEALGTLIRLLGCTAREASKDSNGGIAHEKLWRMLVLNYNKFAPSQEAEEPREVD 1055
             .|.::..|..|      :|......|.........:.|||..:          .|..:|.::..
  Fly  1291 -ERQKKFEELEE------KLKQAQQSEQKLQQESQTSKEKLTEI----------QQSLQELQDSV 1338

  Fly  1056 AYSQRCMQLLEEQFDELFALLDS-----TDVNTEYVRHPTC---------------NTLQERAA- 1099
            ...:..:|.|||:..|..:::::     .:.|.:.....:|               ..|||.|| 
  Fly  1339 KQKEELVQNLEEKVRESSSIIEAQNTKLNESNVQLENKTSCLKETQDQLLESQKKEKQLQEEAAK 1403

  Fly  1100 ------QVKRHYEDVKNLELTVAEREK--EIKSLKYTAKMKQQ-----DYSELQVRKEMAEKQLS 1151
                  ||:....|:|:..:.|.|..|  |.|....|:::..|     :..||.|:.:..|..| 
  Fly  1404 LSGELQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLDAQQATNKELQELLVKSQENEGNL- 1467

  Fly  1152 KQCHVLAGFAEAVEQLEQ-------SILAKEAALGQALNMLADKLTSLE-QSQEHWK-----EQQ 1203
             |...|| ..|.::||||       ::..||..|.:....|.:..|.|| |.:.|.:     ||.
  Fly  1468 -QGESLA-VTEKLQQLEQANGELKEALCQKENGLKELQGKLDESNTVLESQKKSHNEIQDKLEQA 1530

  Fly  1204 QADSACLTSTTISSNREMNMLHQA-------LRQ-----ERSLRVELQGSEMRKTF--------- 1247
            |.....|...|.....:::.|.||       |:|     |:....:.|.:|.:|..         
  Fly  1531 QQKERTLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQKVIDEMDDAASV 1595

  Fly  1248 --AALEPLHVPQAGSQELTDLEKDLRSLKNQWLLAHLEMGAAGRQRRSEIELQGSR 1301
              |.||.|      ...:.:||..||...:....|:||.....||..| :||:.||
  Fly  1596 KSALLEQL------QNRVAELETALRQANDAQKTAYLETKELRRQLES-LELEKSR 1644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9279NP_649124.1 NIP100 7..642 CDD:227569 179/794 (23%)
CAP_GLY 10..74 CDD:279625 33/63 (52%)
Smc 422..>1276 CDD:224117 225/1029 (22%)
PCRF 422..>490 CDD:305100 18/69 (26%)
Dynactin 702..965 CDD:289240 64/329 (19%)
CLIP-190NP_001368962.1 PHA03307 <2..>118 CDD:223039
CAP_GLY 125..189 CDD:396049 34/67 (51%)
CAP_GLY 239..306 CDD:396049 8/66 (12%)
SMC_prok_B <546..912 CDD:274008 89/390 (23%)
Smc 734..1591 CDD:224117 199/921 (22%)
SHE3 1502..1702 CDD:293683 38/150 (25%)
CLIP1_ZNF 1773..1789 CDD:406934
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447781
Domainoid 1 1.000 58 1.000 Domainoid score I2622
eggNOG 1 0.900 - - E1_COG5244
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.830

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