DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dred and Clip3

DIOPT Version :10

Sequence 1:NP_649124.1 Gene:Dred / 40124 FlyBaseID:FBgn0036882 Length:1339 Species:Drosophila melanogaster
Sequence 2:NP_001100971.1 Gene:Clip3 / 308493 RGDID:1306245 Length:547 Species:Rattus norvegicus


Alignment Length:136 Identity:50/136 - (36%)
Similarity:67/136 - (49%) Gaps:19/136 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MMSPRELKLGQRVEVTGKNLQGKVAYVGRTNFAAGLWYGVVLDEPLGKNNGSVHGSIYFKCPTNC 65
            |:|...|:||.||.:.|:. .|.:.:.|.|.||:|.|.||.||||.|||:|||.|..||.||...
  Rat   288 MLSALGLRLGDRVLLDGQK-TGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQ 351

  Fly    66 GLFVRAQQLVRIAELPKGGDNRKADEMQRDGARAKLSRRSGSGKSVEEQDNQREQQASTSGKVKA 130
            |||....::.:..:.|...........:.|     .||.:|.|:        ||.:    ||.|:
  Rat   352 GLFASVSKVSKAVDAPPSSVTSTPRTPRMD-----FSRVTGKGR--------REHK----GKKKS 399

  Fly   131 TSSTPS 136
            .|| ||
  Rat   400 PSS-PS 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DredNP_649124.1 CAP_GLY 9..74 CDD:460154 32/64 (50%)
Metaviral_G 171..306 CDD:462833
Smc <373..>704 CDD:440809
Dynactin 688..967 CDD:463591
Smc <1092..>1305 CDD:440809
Clip3NP_001100971.1 ANKYR <101..>235 CDD:440430
ANK repeat 120..157 CDD:293786
ANK repeat 159..190 CDD:293786
ANK repeat 198..228 CDD:293786
CAP_GLY 296..360 CDD:460154 32/64 (50%)
CAP_GLY 418..482 CDD:460154
Blue background indicates that the domain is not in the aligned region.

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