DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv1 and Pkd1l2

DIOPT Version :9

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_038954049.1 Gene:Pkd1l2 / 691069 RGDID:1588631 Length:2492 Species:Rattus norvegicus


Alignment Length:605 Identity:131/605 - (21%)
Similarity:217/605 - (35%) Gaps:137/605 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 ELMITERHRNERVNLKYRLITEELWLTGKLFLVYFFMALAFFDELLY-FNTEATELLFQCNHGDA 165
            |.|.|.|.:.::.   :.||.|.|...|.|::: ..:|....|...| ||........|      
  Rat  1958 EKMKTARLKEQKA---FALIREILAYLGFLWML-LLVAYGQRDPSAYHFNRHLERSFTQ------ 2012

  Fly   166 FGLLSVGDVPDIYFFVVSSLVLAFTDGKNTSGGAPWIHAEG-TRLLGVVRLRQLRTESN------ 223
             |..:|.|......:..::||      ||..|..|....:| ::|:|...|||:|...:      
  Rat  2013 -GFSAVLDFRGFLEWANTTLV------KNLYGHHPGFVTDGNSKLVGSAHLRQVRVRESSCAVAW 2070

  Fly   224 ---------RLGLSLPVFTERDFSESWTL-PYERVPYTDKYWPI--------YTPWLPSVSVARD 270
                     |...||......|:.|.|.. .:.......|.|..        |..|         
  Rat  2071 QLRGSFDGCRAPYSLDAEDLADYGEGWNASAHNSSDGFPKVWQYQSQSRRRGYPTW--------- 2126

  Fly   271 NLLMGINHVGHMFNYPESKGYKVLLSDTRHKSLKIIDYLMKKNWLDANTTALFMDFSLYNADANT 335
                     |.:..| ...||.|.|......:.:|:.:|....||||.|.|||::|::|||:.|.
  Rat  2127 ---------GKLAVY-GGGGYVVPLGTDHQSASRILQHLFDNRWLDALTRALFVEFTVYNANVNL 2181

  Fly   336 FTVCTLWVEKFPYQYPDGHTRIESHTFVEQLREFTKFGMLMVFVFVVTWLQFTKAFFLKVWYDPR 400
            ....||.:|      ..|.....||..::.||.:........||.|...:.|...|:..|.....
  Rat  2182 LCCVTLTLE------TSGLGTFFSHVTLQSLRLYPFTDGWHPFVVVAELVYFLFLFYYMVEQGKL 2240

  Fly   401 QLKTLWVQVDAMIVALSLVVGMIMSVRDNLVQ---------KMIKSVEIAVVVD----------- 445
            ..|..|              |...| :.||::         .::..|:.||:.|           
  Rat  2241 MRKQKW--------------GYFCS-KWNLLELAIILASWSALVVFVKRAVLADRDLQHYRKNRG 2290

  Fly   446 -FLDFREPAQLAYLEDVVTGLAVALVTMRLWKVLQFSATFQLFTKTIAMAWDALLCTFVITVIFI 509
             .:.|.|.|........:....|.|.|::||.:|:.:....:.|..:..||..:.....:.:|.:
  Rat  2291 EGVSFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITSALRSAWGDISGFVTVILIML 2355

  Fly   510 IAIGIATVTING----NYTSNFRDFPKGIVTVTCFAFGYTNLV-YPPDIFYGGEWLGILL----Y 565
            :|..||:..|.|    :|.:.| |..:.::::....|.|..:: |.|       .||.||    .
  Rat  2356 LAYSIASHLIFGWKLRSYKTLF-DAAETMISLQLGIFNYEEVLDYSP-------VLGSLLIGSCI 2412

  Fly   566 TIMGFVVKYMLINLIVSMMRDQMASVKADRDKKVRQRITFWQFLRVEYAHFINYIVKVFHCQKGY 630
            ..|.|||..:.|::|:....::..|.:...:.::.      ..|.::...|:.     ..|    
  Rat  2413 VFMTFVVLNLFISVILVAFSEEQKSDQLSEEGEIA------DLLLMKILSFLG-----IRC---- 2462

  Fly   631 QRKNRTVAQNIQRKLNSNEL 650
             ::..|.:.:.|.:|:.|.|
  Rat  2463 -KREETWSSSEQPELSPNTL 2481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 PKD_channel 165..591 CDD:285288 106/480 (22%)
Pkd1l2XP_038954049.1 CLECT 70..186 CDD:153057
Gal_Lectin 201..283 CDD:396628
REJ <697..894 CDD:366875
GPS 1308..1347 CDD:396408
PLAT_polycystin 1418..1537 CDD:238850
PKD_channel 2013..2433 CDD:400395 106/473 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10877
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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