DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv1 and pkd1l2a

DIOPT Version :10

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_017212723.2 Gene:pkd1l2a / 497373 ZFINID:ZDB-GENE-050208-89 Length:2484 Species:Danio rerio


Alignment Length:632 Identity:139/632 - (21%)
Similarity:248/632 - (39%) Gaps:121/632 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 YGKFNMI--LVAFLAVTLLQILIFTPIKFTIMSLDAAFWPAHQAPETPDE--NANVDTFMDN--- 91
            |||...|  |::.:......:.|..|:|  ::.. |.|:.........||  :.::|..:.|   
Zfish  1875 YGKERSISWLISMVVSFFESLFITQPVK--VLGF-AVFFALVLKTVDQDEYGDVSIDGTLSNTDD 1936

  Fly    92 ---LRLRLRTLRSEL------MITERHRNERVNLK--YRLITEELWLTGKLFLVYFFMALAFFDE 145
               :|:..|......      ...|:.||..:..:  :.||.|.|...|.|::: ..:|....|.
Zfish  1937 PDAVRIARRDSTCSFYKPPPPTDIEKMRNNMIKEQKVFALIREILIYVGFLWML-LLVAYGQRDP 2000

  Fly   146 LLY---------FNTEATELLFQCNHGDAFGLLSVGDVPDIYFFVVSSLVLAFTDGKNTSGGAPW 201
            ..|         |:|..:|.|   ||            .||:.:..|||:      :|..|..|.
Zfish  2001 NAYYLTHHIRQSFSTGISETL---NH------------KDIFIWANSSLL------RNLYGQYPG 2044

  Fly   202 IHAEG-TRLLGVVRLRQLRTESNRLGLSLPV-FTERDFSESWTLPYERVPYTDKYW--------- 255
            ...:| ::|:|..|:||:|...:...::.|: ::.||....::...|.:......|         
Zfish  2045 FITDGNSKLVGNARIRQVRVRRDTCKIANPMQYSVRDCHAPYSWESEDMGSYSPGWNQTRNVNGS 2109

  Fly   256 -PIYTPWLPSVSVARDNLLMGINHV-GHMFNYPESKGYKVLLSDTRHKSLKIIDYLMKKNWLDAN 318
             .:..||.......     :..|.| |.:..| :..|:.|.|...:..:.:::.||....|||..
Zfish  2110 KTVLKPWYYQTQAK-----LRANPVWGGLALY-KGGGFVVDLGPDQKNASRLLQYLFDNTWLDVY 2168

  Fly   319 TTALFMDFSLYNADANTFTVCTLWVEKF---PYQYPDGHTRIESHTFVEQLREFTKFGMLMVFVF 380
            |.|:|::|::|||:.|.|.:.||..|..   .:||......:..:........|......:.::|
Zfish  2169 TRAVFVEFTVYNANVNLFCIVTLIFETTGVGTFQYRSEVQAVHLYQSTGGFHVFVMASEAIYYIF 2233

  Fly   381 VVTWL--------QFTKAFFLKVWYDPRQLKTLWVQVDAMIVALS------LVVGMIMSVRDNLV 431
            ::.::        |...|:|          |:.|..::..|:.||      .|...|:..||...
Zfish  2234 ILYYMVVQGKLMKQQKWAYF----------KSKWNLLELAIIILSWSALSVFVKRTILGNRDIEF 2288

  Fly   432 QKMIKSVEIAVVVDFLDFREPAQLAYLEDVVTGLAVA----LVTMRLWKVLQFSATFQLFTKTIA 492
            .:..|.:       |:.|.|.|    ..|.|.|..:|    |.|::||.:|:.:....:.|.|:.
Zfish  2289 YQNNKDM-------FVSFNETA----TADAVLGYLIAFLVLLATIKLWHLLRLNPKLHMITSTLQ 2342

  Fly   493 MAWDALLCTFVITVIFIIAIGIATVTINGNYTSNFRDFPKGIVTVTCFAFGYTN----LVYPPDI 553
            .||..:....|:..|..:|..||...:.|...:::|...:...|:.|...|..|    |.|.|.:
Zfish  2343 RAWTDISGFIVVMTIMFLAYSIACNLMYGWRLNSYRTLLEAAQTIICLQLGIFNYDEVLDYNPVL 2407

  Fly   554 FYGGEWLGILLYTIMGFVVKYMLINLI-VSMMRDQMASVKADRDKKV 599
              |...:|..: ..|.|||..:.|::| |:...:|:....::.::.|
Zfish  2408 --GAFLIGSCI-IFMTFVVLNLFISVILVAFNEEQLHPTPSEEEEIV 2451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 Polycystin_dom 167..363 CDD:466668 48/211 (23%)
PKD_channel 364..591 CDD:462341 56/249 (22%)
pkd1l2aXP_017212723.2 CLECT 40..159 CDD:153057
Gal_Rha_Lectin_PKD1L2 162..260 CDD:438688
PKD 275..346 CDD:214510
REJ <632..918 CDD:366875
GPS 1298..1343 CDD:470616
PLAT_polycystin 1406..1525 CDD:238850
Polycystin_dom 2025..2213 CDD:466668 48/199 (24%)
PKD_channel 2218..2437 CDD:462341 55/242 (23%)
Blue background indicates that the domain is not in the aligned region.

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