DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv1 and Loxhd1

DIOPT Version :10

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:NP_001401329.1 Gene:Loxhd1 / 291427 RGDID:1304815 Length:2278 Species:Rattus norvegicus


Alignment Length:478 Identity:92/478 - (19%)
Similarity:155/478 - (32%) Gaps:168/478 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 MSLDAAFWPAHQAPETPDENANV-DTFMDNLRLRLRTLRSELMITERHRNERVNLKYRLITEELW 126
            |:.....|.|    :..|:.:.| |.|...|:.||.|......||             |.|.:::
  Rat  1276 MTFPCGRWLA----KNEDDGSIVRDLFHAELQTRLYTPFVPYEIT-------------LYTSDVF 1323

  Fly   127 LTG---KLFLV-YFFMALAFFDELLYFNTEATELLFQCNHGDAFGLLSVGDVPDIYFFVVSSLVL 187
            ..|   .:|:| |...|:....:.|..|....:|||:......| ::.:.||.:|        :.
  Rat  1324 AAGTDANVFIVIYGCDAVCTRQKFLCTNKREQKLLFERKSASRF-IVELEDVGEI--------IE 1379

  Fly   188 AFTDGKNTSGGAPWIHAEGTRLLGVVRLRQLRTESNRLGLSLPVFTERDFSESWTLPYER----- 247
            ....|.:.:|..|..|...      |.:|:|          ||   |:|.:|:.|.|.:|     
  Rat  1380 KIRIGHDNTGINPGWHCSH------VDIRRL----------LP---EKDGTETLTFPCDRWLATS 1425

  Fly   248 ----------VPY---TDKYW-----------------------PIYTPWLPS--------VSVA 268
                      |||   |:||.                       .|:|..:|.        :::.
  Rat  1426 EDDKKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDIVLYSVQIFTGNVPGAGTDAKVYITIY 1490

  Fly   269 RDNLLMGINHVGHMFNYPE--SKG---------------YKVLLSDTRHKSLK-IIDYLMKK--- 312
            .|....|..::|...|...  .||               ||:.|   ||.:.| ..|:.::|   
  Rat  1491 GDLGDTGERYLGKSENRTNKFEKGTADTFIIEAADLGVIYKIKL---RHDNTKWCADWYVEKVEI 1552

  Fly   313 --------------NWL-----DANTTALFMDFSLYNAD--ANTFTVCTLWVEKFPYQYPDGHTR 356
                          .||     |.....||.: ..|..|  :|..:....|......:..|    
  Rat  1553 WNDTNEDEFLFLCGRWLSLKKEDGRLERLFYE-KEYTGDRSSNCSSPADFWEIALSSKMAD---- 1612

  Fly   357 IESHTFVEQLREFTKFGMLMVFVFVVTWLQF------TKAFFLKVWYDPRQLKTLWV-------- 407
            ::..|....:.::.:.|.::.:...||..:.      ::||.|.:..|..:...:|:        
  Rat  1613 VDIDTVTGPMVDYVQDGPVIPYYVSVTTGKHKEAATDSRAFVLLIGEDDERTNRIWLDFPQGKRG 1677

  Fly   408 ----QVDAMIVALSLVVGMIMSV 426
                .|:...|. .|.||:|..:
  Rat  1678 FSCGSVEEFYVG-GLDVGIIKKI 1699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 Polycystin_dom 167..363 CDD:466668 52/286 (18%)
PKD_channel 364..591 CDD:462341 14/81 (17%)
Loxhd1NP_001401329.1 PLAT_repeat 43..162 CDD:238854
PLAT_repeat 172..289 CDD:238854
PLAT_repeat 296..414 CDD:238854
PLAT_repeat 425..542 CDD:238854
PLAT_repeat 554..675 CDD:238854
PLAT_repeat 684..805 CDD:238854
PLAT 816..>896 CDD:412108
PLAT_repeat 1026..1146 CDD:238854
PLAT_repeat 1180..1300 CDD:238854 7/27 (26%)
PLAT_repeat 1311..1437 CDD:238854 33/166 (20%)
PLAT_repeat 1465..1585 CDD:238854 22/123 (18%)
PLAT 1634..1749 CDD:396180 13/67 (19%)
PLAT_repeat 1763..1880 CDD:238854
PLAT_repeat 1890..2010 CDD:238854
PLAT 2023..2124 CDD:412108
PLAT_repeat 2159..2277 CDD:238854
Blue background indicates that the domain is not in the aligned region.

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