DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brv1 and Pkd1

DIOPT Version :9

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:NP_001244281.1 Gene:Pkd1 / 24650 RGDID:3333 Length:4292 Species:Rattus norvegicus


Alignment Length:677 Identity:144/677 - (21%)
Similarity:242/677 - (35%) Gaps:165/677 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LTLIIIAICVACI-WMFSGFRHEYGKFNMILVAFLAVTLLQILIFTPIKFTIMSLDAAFWPAHQA 75
            |:|:::|:.||.. |:.:.|......  |.|::..:..|...|.:.|:|   :.|:|.::.....
  Rat  3550 LSLLLVAVAVAVSGWIGASFPPSVSV--MWLLSSSSSFLASFLGWEPLK---VLLEALYFSLVAK 3609

  Fly    76 PETPDENANVDTFMDNLRL--------RLRTLRSELMITERHRNERVNLKYRLITEELWLTGKLF 132
            ...|||:   ||.:::..:        |:|......:...:....:|...:.::        |..
  Rat  3610 RLHPDED---DTLVESPAVTPVSERVPRVRPPHGFALFLAKEEARKVKRLHDML--------KSL 3663

  Fly   133 LVYFFMALAFFDELLYFNTEATELLFQCNHGDAFGLLSVGDVPDIYFFVVSSLVLAFTDGKNTSG 197
            |||....|.   .||....:|:     | ||.|:.|.|.     |...:.|...||.|   .:..
  Rat  3664 LVYMLFLLV---TLLANYGDAS-----C-HGHAYRLQSA-----IKQELDSQAFLAIT---RSDE 3711

  Fly   198 GAPW--------IHA-EGTRLLGVVRLRQLR---------TESNRLGLSLPVFTERDFSESWTLP 244
            ..||        :|. :.:..||..||||:|         :.|..:..:....:..|:...|...
  Rat  3712 FWPWMSHVLLPYVHGNQSSPELGPPRLRQVRLQEAFCPDPSSSEHMCSATGSLSTSDYGIGWQSV 3776

  Fly   245 YERVPYTDKYWPIYTPWLPSVSVARDNLLMGINHVGHMFNYPESKGYKVLLSDTRHKSLKIIDYL 309
            .:....|   |....|         |  |:|..:.|:...| :|.||...|..:..:|...:.:|
  Rat  3777 VQNGSET---WAYSAP---------D--LLGAWYWGYCAVY-DSGGYIQELGLSLEESRARLGFL 3826

  Fly   310 MKKNWLDANTTALFMDFSLYNADANTFTVCTLWVEKFPYQYPDGHTRIESHTFVEQLREFTKFGM 374
            ...||||:....:|::.:.|:.........||.:| ||..   ||...........||..:. |:
  Rat  3827 QLHNWLDSRWVLMFVELTRYSPAVGLHAAVTLRLE-FPVA---GHALAAFSVRPFALRRLST-GL 3886

  Fly   375 LMVFVFVVTWLQFTKAFF---LKVWYDPRQLKT----LWVQVDAMIVALSLVVGMIMSVRDNLVQ 432
            .:..:..|..|.|...|.   :..|......:|    .|.:  .::|.|:...|::     .|.|
  Rat  3887 SLPLLTSVCLLLFALYFSVAEVHTWRREGCARTARPEAWAR--WLLVMLTAATGLV-----RLAQ 3944

  Fly   433 KMIKSVEIAVVV-----DFLDFREPAQLAYLEDVVTGLAVALVTMRLWKV---LQFSATFQLFTK 489
            ..|...:....|     .|..|.:.|||.   .|..|||.:|:.:.|.|.   |:|...:.:|.|
  Rat  3945 LGIADRQWTRFVHDHPHHFTSFDQVAQLG---SVARGLAASLLFLLLVKAAQQLRFVRQWSVFGK 4006

  Fly   490 TIAMAWDALL----------CTFVITVIFIIAIGIATVTINGNYTSNFRDF----PKGIVTVTCF 540
            |:..|...|:          ..:....|.:|:.|..|:      .|..|.|    |...|...| 
  Rat  4007 TLCRALPELMGATLGLVLLGVAYAQMAILLISSGADTL------YSMARAFLVLCPGARVPTLC- 4064

  Fly   541 AFGYTNLVYPPDIFY------GGEW---------LGILL-----YTIMGFVVK-------YMLIN 578
                     |.:.:|      .|.|         ||.:|     :.:.|.:.:       |.::.
  Rat  4065 ---------PSESWYLSPLLCVGLWALRVWGALRLGAVLLRWRYHALRGELYRPAWEPQDYEMVE 4120

  Fly   579 LIVSMMRDQMASVKADRDKKVRQRITF 605
            |.:..:|..|...|.   |:.|.::.|
  Rat  4121 LFLRRLRLWMGFSKV---KEFRHKVRF 4144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 PKD_channel 165..591 CDD:285288 106/499 (21%)
Pkd1NP_001244281.1 LRRNT 32..71 CDD:214470
LRR_8 61..127 CDD:290566
leucine-rich repeat 70..92 CDD:275378
LRR_4 72..108 CDD:289563
leucine-rich repeat 93..116 CDD:275378
PCC 97..2722 CDD:188093
leucine-rich repeat 117..129 CDD:275378
LRRCT 125..177 CDD:214507
WSC 177..271 CDD:214616
PKD 277..344 CDD:279180
CLECT 406..530 CDD:214480
PKD 927..1007 CDD:214510
PKD 1017..1115 CDD:214510
PKD 1124..1195 CDD:279180
PKD 1214..1278 CDD:279180
PKD 1289..1370 CDD:214510
PKD 1378..1449 CDD:279180
PKD 1471..1538 CDD:214510
PKD 1546..1615 CDD:279180
PKD 1635..1703 CDD:279180
PKD 1718..1787 CDD:279180
PKD 1807..1871 CDD:279180
PKD 1886..1955 CDD:279180
PKD 1974..2045 CDD:279180
PKD 2062..2129 CDD:279180
GPS 3002..3051 CDD:197639
PLAT_polycystin 3109..3228 CDD:238850
PKD_channel 3700..4102 CDD:285288 97/450 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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