DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv1 and Pkd1

DIOPT Version :9

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_036016298.1 Gene:Pkd1 / 18763 MGIID:97603 Length:4316 Species:Mus musculus


Alignment Length:668 Identity:142/668 - (21%)
Similarity:247/668 - (36%) Gaps:147/668 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LTLIIIAICVACI-WMFSGFRHEYGKFNMILVAFLAVTLLQILIFTPIKFTIMSLDAAFWPAHQA 75
            |:|:::|:.||.. |:.:.|......  |.|::..:..|...|.:.|:|   :.|:|.::.....
Mouse  3574 LSLLLVAVAVAVSGWIGASFPPSVSV--MWLLSSSSSFLASFLGWEPLK---VLLEALYFSLVAK 3633

  Fly    76 PETPDENANVDTFMDNLRL--------RLRTLRSELMITERHRNERVNLKYRLITEELWLTGKLF 132
            ...|||:   ||.:::..:        |:|......:...:....:|...:.::        |..
Mouse  3634 RLHPDED---DTLVESPAVTPVSERVPRVRPPHGFALFLAKEEARKVKRLHDML--------KRL 3687

  Fly   133 LVYFFMALAFFDELLYFNTEATELLFQCNHGDAFGLLSVGDVPDIYFFVVSSLVLAFTDGKN--- 194
            |||....|.   .||....:|:     | ||.|:.|.|.     |...:.|...||.|....   
Mouse  3688 LVYMLFLLV---TLLANYGDAS-----C-HGHAYRLQSA-----IKQELDSQAFLAITRSDEFWP 3738

  Fly   195 --TSGGAPWIHA-EGTRLLGVVRLRQLR---------TESNRLGLSLPVFTERDFSESWTLPYER 247
              :....|::|. :.:..||..||||:|         :.|..:..:....:..|:...|....:.
Mouse  3739 WMSHVFLPYVHGNQSSPELGPPRLRQVRLQEAFCPDPSSSEHMCSAAGSLSTSDYGIGWQSVVQN 3803

  Fly   248 VPYTDKYWPIYTPWLPSVSVARDNLLMGINHVGHMFNYPESKGYKVLLSDTRHKSLKIIDYLMKK 312
            ...|   |....|         |  |:|..:.|:...| :|.||...|..:..:|...:.:|...
Mouse  3804 GSET---WAYSAP---------D--LLGAWYWGYCAVY-DSGGYIQELGLSLEESRARLGFLQLH 3853

  Fly   313 NWLDANTTALFMDFSLYNADANTFTVCTLWVEKFPYQYPDGHTRIESHTFVEQLREFTKFGMLMV 377
            ||||:.:.|:|::.:.|:.........||.:| ||..   ||...........||..:. |:.:.
Mouse  3854 NWLDSRSRAVFVELTRYSPAVGLHAAVTLRLE-FPVA---GHALAAFSVRPFALRRLST-GLSLP 3913

  Fly   378 FVFVVTWLQFTKAFFL---KVWYDPRQLKT----LWVQVDAMIVALSLVVGMIMSVRDNLVQKMI 435
            .:..|..|.|...|.:   :.|.......|    .|.:  .::|.|:...|::     .|.|..|
Mouse  3914 LLTSVCLLLFALYFSMAEVQTWRKDGCACTARPDTWAR--CLLVILTAATGLV-----RLAQLGI 3971

  Fly   436 KSVEIAVVVD-----FLDFREPAQLAYLEDVVTGLAVALVTMRLWKV---LQFSATFQLFTKTIA 492
            ...:....|.     |..|.:.|||.   .|..|||.:|:.:.|.|.   |:|...:.:|.||:.
Mouse  3972 ADRQWTHFVQDHPRHFTSFDQVAQLG---SVARGLAASLLFLLLVKAAQQLRFVRQWSVFGKTLC 4033

  Fly   493 MAWDALL-CTFVITVIFIIAIGIATVTINGNYTSNF---RDF----PKGIVTVTCFAFGYTNLVY 549
            .|...|: .|..:.::.:....:|.:.|:....:.:   |.|    |...|...|          
Mouse  4034 RALPELMGATLGLVLLGVAYAQMAILLISSGADTLYNMARAFLVLCPGARVPTLC---------- 4088

  Fly   550 PPDIFY------GGEW---------LGILL-----YTIMGFVVK-------YMLINLIVSMMRDQ 587
            |.:.:|      .|.|         ||.:|     :.:.|.:.:       |.::.|.:..:|..
Mouse  4089 PSESWYLSPLLCVGLWALRVWGALRLGAILLRWRYHALRGELYRPAWEPQDYEMVELFLRRLRLW 4153

  Fly   588 MASVKADRDKKVRQRITF 605
            |...|.   |:.|.::.|
Mouse  4154 MGFSKV---KEFRHKVRF 4168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 PKD_channel 165..591 CDD:285288 104/490 (21%)
Pkd1XP_036016298.1 LRRNT 32..71 CDD:214470
LRR_8 61..127 CDD:404697
leucine-rich repeat 70..92 CDD:275378
leucine-rich repeat 93..116 CDD:275378
PCC 97..2731 CDD:188093
leucine-rich repeat 117..129 CDD:275378
GPS 3011..3060 CDD:413374
PLAT_polycystin 3118..3237 CDD:238850
PKD_channel 3726..4126 CDD:400395 94/439 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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