DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brv1 and LOXHD1

DIOPT Version :10

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:NP_001371403.1 Gene:LOXHD1 / 125336 HGNCID:26521 Length:2273 Species:Homo sapiens


Alignment Length:585 Identity:107/585 - (18%)
Similarity:188/585 - (32%) Gaps:199/585 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 MSLDAAFWPAHQAPETPDENANV-DTFMDNLRLRLRTLRSELMITERHRNERVNLKYRLITEELW 126
            |:.....|.|    :..|:.:.: |.|...|:.||.|......||             |.|.:::
Human  1271 MTFPCGRWLA----KNEDDGSIIRDLFHAELQTRLYTPFVPYEIT-------------LYTSDVF 1318

  Fly   127 LTGK----LFLVYFFMALAFFDELLYFNTEATELLFQCNHGDAFGLLSVGDVPDIYFFVVSSLVL 187
            ..|.    ..::|...|:....:.|..|....:..|:......| ::.:.||.:|        :.
Human  1319 AAGTDANIFIIIYGCDAVCTQQKYLCTNKREQKQFFERKSASRF-IVELEDVGEI--------IE 1374

  Fly   188 AFTDGKNTSGGAPWIHAEGTRLLGVVRLRQLRTESNRLGLSLPVFTERDFSESWTLPYER----- 247
            ....|.|.:|..|..|...      |.:|:|          ||   ::|.:|:.|.|.:|     
Human  1375 KIRIGHNNTGMNPGWHCSH------VDIRRL----------LP---DKDGAETLTFPCDRWLATS 1420

  Fly   248 ----------VPY---TDKYW-----------------------PIYTPWLPS--------VSVA 268
                      |||   |:||.                       .|:|..:|.        :::.
Human  1421 EDDKKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDIVLYSVQIFTGNIPGAGTDAKVYITIY 1485

  Fly   269 RDNLLMGINHVGHMFNYPE--SKG---------------YKVLLSDTRHKSLK-IIDYLMKK--- 312
            .|....|..::|...|...  .:|               ||:.|   ||.:.| ..|:.::|   
Human  1486 GDLGDTGERYLGKSENRTNKFERGTADTFIIEAADLGVIYKIKL---RHDNSKWCADWYVEKVEI 1547

  Fly   313 --------------NWL-----DANTTALFMDFSLYNAD--ANTFTVCTLWVEKFPYQYPDGHTR 356
                          .||     |.....||.: ..|..|  :|..:....|......:..|    
Human  1548 WNDTNEDEFLFLCGRWLSLKKEDGRLERLFYE-KEYTGDRSSNCSSPADFWEIALSSKMAD---- 1607

  Fly   357 IESHTFVEQLREFTKFGMLMVFVFVVTWLQF------TKAFFLKVWYDPRQLKTLWV-------- 407
            ::..|....:.::.:.|.::.:...||..:.      ::||...:..|..:.|.:|:        
Human  1608 VDISTVTGPMADYVQEGPIIPYYVSVTTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKRG 1672

  Fly   408 ----QVDAMIVALSLVVGMIMSV---RDNLVQKMIKSVEIAVVVDFLDFREPAQ-LAYLEDVVTG 464
                .|:...|| .|.||:|..:   .|.      .|.|...:|:.|....|.| ..|:.:....
Human  1673 FSRGSVEEFYVA-GLDVGIIKKIELGHDG------ASPESCWLVEELCLAVPTQGTKYMLNCNCW 1730

  Fly   465 LAVAL---VTMRLWKVLQFSATFQLFTKTIAMAWDALLCTFVITVIFIIAIGIATVTINGNYTSN 526
            ||...   :|.|::.:|                 ||::....:.|::.:.:....| :.|...||
Human  1731 LAKDRGDGITSRVFDLL-----------------DAMVVNIGVKVLYEMTVWTGDV-VGGGTDSN 1777

  Fly   527  526
            Human  1778  1777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 Polycystin_dom 167..363 CDD:466668 51/286 (18%)
PKD_channel 364..591 CDD:462341 35/188 (19%)
LOXHD1NP_001371403.1 PLAT_repeat 44..162 CDD:238854
PLAT_repeat 172..289 CDD:238854
PLAT_repeat 296..414 CDD:238854
PLAT_repeat 425..542 CDD:238854
PLAT_repeat 554..675 CDD:238854
PLAT_repeat 684..805 CDD:238854
PLAT 816..>896 CDD:412108
PLAT_repeat 1022..1142 CDD:238854
PLAT_repeat 1175..1295 CDD:238854 6/27 (22%)
PLAT_repeat 1306..1432 CDD:238854 29/166 (17%)
PLAT_repeat 1460..1580 CDD:238854 21/123 (17%)
PLAT 1629..1744 CDD:412108 26/121 (21%)
PLAT_repeat 1758..1875 CDD:238854 5/21 (24%)
PLAT_repeat 1885..2005 CDD:238854
PLAT 2018..2119 CDD:412108
PLAT_repeat 2154..2272 CDD:238854
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.