DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brv1 and pkd1l1

DIOPT Version :9

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_021325910.1 Gene:pkd1l1 / 101887130 -ID:- Length:2572 Species:Danio rerio


Alignment Length:505 Identity:89/505 - (17%)
Similarity:172/505 - (34%) Gaps:163/505 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 KGYKVLLS--DTRHKSLKIIDYLMKKNWLDANTTALFMDFSLYNADANTFTVCTLWVEKFPYQYP 351
            ||.:|.:|  .||..:...:..|::..|:...|..:.:.|.|||..:|.||..|:.|||      
Zfish  2136 KGERVYVSLGKTRLNAFTSVKRLLETGWMTPFTQIVILQFVLYNGPSNLFTSVTILVEK------ 2194

  Fly   352 DGHTRIESHTFVEQLREFTKFGMLMVFVFVVTWLQFTKAFFLKVWYDPRQLKTLWVQVDAMIVAL 416
                              |..|.|:....|    |.|:.::.....|   ...:..:|..:|.:|
Zfish  2195 ------------------TSTGALLPSASV----QSTRLYYFPTALD---YSVMICEVTVIICSL 2234

  Fly   417 SLVVGMI--MSVRDNLVQKMIKSVEIAVVVDFLDFREPAQLAYLEDVVT---------------- 463
            .|.:..:  :.::..::. .:|..:..::||........||.:|:...|                
Zfish  2235 LLYICSMYKLQLKTEVID-FLKKEDFKLLVDLSSIFFCEQLYFLKHQTTYNNFFSPKIITNITKK 2298

  Fly   464 -----------------------GLAVALVTMRLWKVLQFSATFQLFTKTIAMA---WDALLCTF 502
                                   |:.|.|:.::...:|:.:       ||:|.|   |..:..  
Zfish  2299 AVTKKLPICQLPIYHLQLSQSLLGIVVNLLLLKCLHLLRLN-------KTVAAAVVTWKLIFS-- 2354

  Fly   503 VITVIFIIAIGIATVTINGN------YTSNFRDFPKGIVTVTCFAFGYTNLVYPPDIFYGGEWLG 561
              .:|:::|.|:.......|      ::..|....:.:.|...:........:.|..|:|    |
Zfish  2355 --NLIWLLAPGVIIALALSNLCNLILHSVPFTSLTRLLFTRFLYIIDIHLQSHVPPTFFG----G 2413

  Fly   562 ILLYTIMGFVVKYMLINLIVSMMRDQMASVKADRD-----------------KKVRQRITFWQ-- 607
            ::.:|::  .||.:||..:...::......|..:|                 ||...:.|..|  
Zfish  2414 LVFFTMI--PVKAVLIATLAIFVKQAKNKSKKRKDLLSVFELTSYVKALFTIKKASHKSTDHQDH 2476

  Fly   608 ---FLRVEYAHFINYIVKVFH-CQKGYQRKNRTVAQNIQRKLNSNELKRR-KTKISSIY----SE 663
               |...|:...::.:  :|| |         |::.|:..|.|..|::.. ...:|.::    ||
Zfish  2477 ANSFYLAEFEDLMDEL--IFHLC---------TMSDNLPAKENLFEIQSNFSISLSDVHDGSDSE 2530

  Fly   664 TIYVMPIDKDLEQMK--------------YRERIERTFTLAAILHTQMEL 699
            .:....:...|.:.|              ::|.|.|         .|||:
Zfish  2531 CVDGTYMTSQLHKKKHKVFLDGSNGSLLSHKEHIHR---------AQMEI 2571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 PKD_channel 165..591 CDD:285288 62/353 (18%)
pkd1l1XP_021325910.1 PCC <150..>300 CDD:188093
PCC <228..540 CDD:188093
PLAT 1465..1579 CDD:320707
PKD_channel 2042..>2237 CDD:332708 30/131 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.