DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brv1 and pkd1l3

DIOPT Version :9

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_017949004.2 Gene:pkd1l3 / 101734692 -ID:- Length:1080 Species:Xenopus tropicalis


Alignment Length:637 Identity:131/637 - (20%)
Similarity:237/637 - (37%) Gaps:157/637 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 FYLTLIIIAIC--VACIWMFSGFRHEYGKFNMILVAFLAVTLLQILIFTPIKFTIMSL------- 65
            :|:||:.:.:.  .|..|:.|          |:|..|.::.||     .|:|..|.::       
 Frog   485 YYMTLVSLDMTRQKATSWLIS----------MLLSLFHSLFLL-----PPVKAFIQTVFMFRVLR 534

  Fly    66 -----DAA----------------FWPAH--QAPETPDENANVDTFMDNLRLRLRTLRSELMITE 107
                 |||                .|...  :.|:.|       .:...:...:.:|:.:.:|.:
 Frog   535 RSTMDDAAEEQQLHGILSLFANCPDWELSGCRDPQDP-------IYCSPVNKAITSLKRQKLIEK 592

  Fly   108 RHRNERVNLKYRLITEELWLTGKLFLVYFFMALAFFDELLYFNTEATELLFQCNHGDAFG--LLS 170
            |        .|||:.|.     .:.:|:..|.:.    :.|.:....|........::|.  ...
 Frog   593 R--------LYRLVLEI-----AVHVVFLIMTMI----MAYADKSPNEYNLNIAVSNSFSSTFSQ 640

  Fly   171 VGDVPDIYFFVVSSLVLAFTDGKNTSGGAPWIHAEGTR--------LLGVVRLRQLRTESNRLGL 227
            :|::.|.|.:..|:|:             |.::::.|.        |||..|:||||...::..:
 Frog   641 IGNIEDFYSWTSSTLL-------------PNLYSQYTGFITDGNCFLLGSPRIRQLRRAQSQYSI 692

  Fly   228 SLPVFTERDFSESWTLPYERVPYTDKYWPIYTPWLPSVSVARDNLLMGINHVGHMFNYPESKGYK 292
            .    ....:...| ||..|....||.|..||          :..|:|....|.:..| ...|:.
 Frog   693 G----DTGHYKAEW-LPLGRNDTPDKEWKYYT----------EKELVGYPIWGQLGWY-SGGGFV 741

  Fly   293 VLLSDTRHKSLKIIDYLMKKNWLDANTTALFMDFSLYNADANTFTVCT----------------L 341
            ..|.:....:..|:.:|....|||..|.|:|::|::|||:.|.|.:.|                |
 Frog   742 AELGNNIINASSILMWLQTNQWLDTYTKAVFVEFNVYNANVNLFCLATFIMETSAIGNFLTSVDL 806

  Fly   342 WVEKFPYQYPDGHTRIESHTFVEQLREFTKFGMLMVFVFVVTWLQFTKAFFLK--VWYDPRQLKT 404
            .:.|..:...|    |.|..|:..:          :|:.:|.:....:...:|  .|.....:|.
 Frog   807 QIRKLSWSTTD----IFSSQFISYI----------IFLIIVLYNIIQQGLLIKKQKWSYLTNIKN 857

  Fly   405 LWVQVDAMIVALSLV-VGMIMSVRDNLVQKMIKSVEIAVVVD---FLDFREPAQLAYLEDVVTGL 465
            |   :|..|:.:|:. .|:.:.:. .|.|:.|...:    .|   |:.|.|.|....:.......
 Frog   858 L---LDLSIIMISICNTGLYIKLA-LLCQRDINRYQ----QDRTRFVSFYETAIGESIHGYSIAF 914

  Fly   466 AVALVTMRLWKVLQFSATFQLFTKTIAMAWDALLCTFVITVIFIIAIGIATVTINGNYTSNFRDF 530
            .|:|:|.:||.:|..:....|...|:..|||.::...:..:|.|:|..|....:.|....::|.|
 Frog   915 LVSLMTAKLWSLLSLNPNLHLIMVTLRKAWDEIIYFLIAIIIIIVAYSITCNVLYGWKIYSYRTF 979

  Fly   531 PKGIVTVTCFAFGYTNLVYPPDIFYGGEWLGILLYTIMGFVVKYMLINLIVS 582
            ....||:.....|..|.....|:   ...:|.||.|.....:.::|:|:.:|
 Frog   980 FDTAVTIFSLLIGIFNYDQVLDL---SPVIGSLLITTYVIFLVFVLVNIFLS 1028

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 PKD_channel 165..591 CDD:285288 100/450 (22%)
pkd1l3XP_017949004.2 PLAT 66..183 CDD:412108
PKD_channel 638..1035 CDD:400395 99/445 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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