DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv1 and LOC100496797

DIOPT Version :9

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_004918536.3 Gene:LOC100496797 / 100496797 -ID:- Length:4375 Species:Xenopus tropicalis


Alignment Length:690 Identity:126/690 - (18%)
Similarity:239/690 - (34%) Gaps:200/690 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IIFYLTLIIIAICVACIWMFSGFRHEYGKFNMILVAFLAVTLLQILIFTPIKFTIMSLDAAFW-- 70
            :::.:.::::|.|:....::|....:.| ..|.|::.....|...:...|:|..:.||.:|.|  
 Frog  3590 VLYPVLVMLLASCIILTILYSSSLSDQG-ILMWLISSTCALLASAIFLEPLKVLVWSLLSALWVP 3653

  Fly    71 PAHQAPETPDENANVDTFMD---NLRL--------------RLRTLRSELMITERHRNERVNLKY 118
            |.....:...|...|....|   .:|.              |:|.|||.|.....|         
 Frog  3654 PVLSEGDGLVEEPLVKKISDRPCTVRAPGGFSLLQAKEEARRVRALRSLLRSCAGH--------- 3709

  Fly   119 RLITEELWLTGKLFLVYFFMAL------AFFD---ELLYFNTEATELLFQCNHGDAFGLLSVGDV 174
                          :|:|.:.|      :|.|   .||:...:.:......:|.:|..:.||..:
 Frog  3710 --------------MVFFLLVLMVNYQNSFHDANIRLLHTAMKQSVNRATSSHLNASTIQSVSGL 3760

  Fly   175 PDIYFFVVSSLVLAFTDGKNTSGGAP--------------WIHAEGTRLLGVVRLRQLRTESNRL 225
              .::.....|...::|.:.:..|||              |:      ||...:...|...|: :
 Frog  3761 --WHWLDTGLLAHLYSDPRVSLMGAPRLCQQPALLDPLPDWL------LLAAFQSSSLDRNSS-V 3816

  Fly   226 GLSLPVFTERDFSESWTLPYERVPYTDKYWPIYTPWLPSVSVARDNLLMGINH----VGHMFNYP 286
            | |||:                      ||....|.              |||    :|......
 Frog  3817 G-SLPI----------------------YWGDTEPC--------------INHGCPPIGCQDLGT 3844

  Fly   287 ESKGYKVLLSDTRHKSLKIIDYLMKKNWLDANTTALFMDFSLYNADANTFTVCTLWVEKFPYQYP 351
            :.|       :.:|.    :..|...||:  ..::|.::.:.|:.|........|.:.    ...
 Frog  3845 DKK-------EIQHN----VRRLKAANWM--KESSLSVEITQYHRDVQLHISTRLCIS----LSA 3892

  Fly   352 DGHTRIESHTFVEQLREFTKFGMLMVFVFVVTWLQFTKAFFL------------KVWYDPRQLKT 404
            .||. :.|.:.:....:.|:.|:.:.||..|:.|.....|.|            ...|.|.    
 Frog  3893 RGHA-VSSLSILPFHLQETREGLSLPFVLAVSLLFAALCFLLLELRALARCCTDSAGYSPN---- 3952

  Fly   405 LWVQVDAMIVALSLVVGMIMSVRDNLVQKMIKSVEIAVVVDFLDFREPAQLAYLEDVVTGLAVAL 469
             |.::  ::..||..||::..:|.:|.:::::... |....|..|...|.||..|..:....:.|
 Frog  3953 -WTRL--VLGLLSGGVGIVYVLRMSLTKQLLQQYR-AQPTAFTSFYTVAVLARTEVALAATLLLL 4013

  Fly   470 VTMRLWKVLQFSATFQLFTKTIA-MAWDALLCTFVITVIFIIAIGIATVTINGNYTSNFRDFPKG 533
            ..::|.:.|:|...:.:|.|... :.|: ||.:.:||...|:|:                  ...
 Frog  4014 GMLKLAQQLRFVRRWAIFGKAFQNVKWE-LLGSSLITATIILAL------------------THS 4059

  Fly   534 IVTVTCFAFGYTNLVYPPDIFYGGEWLGILLYTIM--GFVVKYMLIN------------LIVSMM 584
            :..|:|       .|||.....|.:    ||.:::  |.:.:.:|.|            .::::.
 Frog  4060 LYVVSC-------AVYPSHHIPGNK----LLRSVLGKGSIFRPVLQNSPALGFCAGLGICLLAVC 4113

  Fly   585 RDQMASVKADRDKKVRQRITFWQFLRVEYAHFINYIVKVF 624
            |..:.:......:|||.. ::...|..:....|:::||.|
 Frog  4114 RGILCAAVLSGHRKVRAE-SYRPVLEPQDYEMIDFLVKRF 4152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 PKD_channel 165..591 CDD:285288 85/470 (18%)
LOC100496797XP_004918536.3 LRRNT 98..129 CDD:214470
LRR_8 127..187 CDD:404697
leucine-rich repeat 153..176 CDD:275378
PCC 158..2745 CDD:188093
GPS 3007..3056 CDD:413374
PLAT_polycystin 3114..3232 CDD:238850
PKD_channel 3752..4063 CDD:400395 72/401 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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