DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv1 and pkd1l1

DIOPT Version :9

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_012820943.2 Gene:pkd1l1 / 100492056 XenbaseID:XB-GENE-480146 Length:2682 Species:Xenopus tropicalis


Alignment Length:842 Identity:154/842 - (18%)
Similarity:285/842 - (33%) Gaps:276/842 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IIIAICVA-------------CI-WMFSGFRHEYGKFNMILVAFLA--VTLLQILIF-TPIKFTI 62
            :|..:|.|             || |..|.|      |::|...|:.  .|:..|..| |..|..|
 Frog  1700 VISIVCAAGTTLIGFSFGPTKCILWAHSVF------FSVIFCTFVVQPSTIFIIAFFMTWRKKEI 1758

  Fly    63 MSLDA------------------AFWPAHQAPETPDENANVDTFMDNLRLRLRTLR-------SE 102
            :.|.|                  .....|..|...|.:.:.:..: ..|.|.|.||       |:
 Frog  1759 IDLFAETVCEATKYFQRETSTFEQISTLHSCPNDLDISTDFEKIL-AARKRARYLRLARPPSPSQ 1822

  Fly   103 LMITERHRNERVNLKYRLITE----ELWLTGKLFLVYFFMALAFFDELLYFNTEATELLFQCNHG 163
            |.:.      :..::.:..||    |.::.|.:.|::.|:.|.                 :|::.
 Frog  1823 LKVV------KDKIRKKTTTEKTFRECFMHGIMILIFLFITLG-----------------KCSND 1864

  Fly   164 DAFGLLSVGDVPDIYFFVVSSLVLAFTDGKNTSGGAPWIHAEGTRLLGVVRLRQLRTESNRLGLS 228
            |              :.:..::...||.           ||:.:       .:.:|||.:....|
 Frog  1865 D--------------YLLNQAVRNEFTR-----------HAKQS-------FKNIRTEDDWWNWS 1897

  Fly   229 LPVFTERDFSESWTLPY-------ERVPYTDKYWPIYTPWLPSVSVAR----------DNLLMGI 276
            ..|..:..:   |...|       :..|...|::.|.||.:...|:..          .:::...
 Frog  1898 FNVLLDGLY---WNKMYNITSAKSKTGPIGGKFFLIGTPIIQKFSLENSSACVTYSFISSIISSY 1959

  Fly   277 NHVGHMFNYPESKGYKVLLSDTRHKSLKIIDY----------------------LMKKNWLDANT 319
            |........|:::.:..:.....|::.|:..|                      :..:.|::.:|
 Frog  1960 NQANDKPKEPDTENHLEVRDKMHHRNGKVHCYKGRKSVINLGRSRTEAYSALLRIQSQQWINHST 2024

  Fly   320 TALFMDFSLYNADANTFTVCTLWVEKFPYQYPDG----HTRIESHTF--VEQLREFTKFGMLMVF 378
            |||.:.|:|||...|.|||..|.:| ||   ..|    .:.|||...  :..|.::....:.::|
 Frog  2025 TALHVLFTLYNPPTNVFTVVLLQME-FP---ASGGVITSSLIESFKIYHIATLLDYITMALKLLF 2085

  Fly   379 VFVVTWLQFTKAFFLKV---------WYDPRQLKTLWVQVDAMIVALSLVVGMIMSVRDNLVQKM 434
            :.::.   ....|.|.|         |.:|      |..::..|:|.||.....::....|...|
 Frog  2086 LGLIL---LHSCFQLGVMIQTGIRNYWQEP------WNWIELGIIASSLCYYACITYTFLLTMDM 2141

  Fly   435 IKSVEIAVVVDFLDFREPAQLAYLEDVVTGLAVALVTMRLWKVLQFSATFQLFTKTIAMAWDALL 499
            |..::......|:|....|........:.|:...|:      |::|...|::: |.:|..     
 Frog  2142 IDRLQKVFFRIFIDCSILAAWEKWNRSLHGIIFFLM------VIKFIKLFRIY-KVMAPC----- 2194

  Fly   500 CTFVITVIFIIAIGIATVTING-NYTSNFRDFPKGIVTVTCFAFGYTNLVYPPDIFYGGEWLGIL 563
                :||:.:.:..:|...|:| .::..|...  |.|.|...:|.::|::         ..|.:|
 Frog  2195 ----LTVLHLSSSSMAFTMISGIIFSLAFSSL--GHVIVLFNSFHFSNMI---------RSLHML 2244

  Fly   564 LYTIMG------------------------FVVKYMLINLI-VSMMRDQMASVKADRDK--KVRQ 601
            ...::|                        :||.::.|.:: ..|:|..:.|:..:..|  :.:|
 Frog  2245 FMNLLGVGDRRLFSFLHLRTKSVPLPATCVYVVLFLFITILWTGMIRGILTSIMKNTSKIHRNKQ 2309

  Fly   602 RITFWQFLRVEYAHFINYIVKVFHCQKGYQRKNRTVAQNIQR-----------------KLN--S 647
            .||    |....:|....:..||    |.||...|......|                 :||  |
 Frog  2310 LIT----LTDVASHAKEKVYSVF----GRQRMKSTDTTTFPRNNFYLEEFEDLIDELLFRLNAIS 2366

  Fly   648 NEL-----------KRRKTKISSIYSETI--YVMPIDKDLEQMKYRERIERTFTLAAILHTQ 696
            |.|           .....::|.:.|.::  :..|.:.||   |...:|:|..|..:..:|:
 Frog  2367 NSLHHSLPAKLHCYTEEAEEVSQLESHSVCCFKPPQESDL---KNDLKIQRQNTAKSQYYTE 2425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 PKD_channel 165..591 CDD:285288 87/505 (17%)
pkd1l1XP_012820943.2 PCC <36..448 CDD:188093
REJ <671..841 CDD:366875
PLAT 1334..1453 CDD:412108
PKD_channel 1891..2250 CDD:400395 74/401 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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