DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv1 and pkd1l2

DIOPT Version :9

Sequence 1:NP_649116.1 Gene:brv1 / 40116 FlyBaseID:FBgn0036874 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_031756633.1 Gene:pkd1l2 / 100486136 XenbaseID:XB-GENE-968335 Length:2458 Species:Xenopus tropicalis


Alignment Length:633 Identity:152/633 - (24%)
Similarity:262/633 - (41%) Gaps:112/633 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 YGKFNMI--LVAFLAVTLLQILIFT-PIKFTIMSLDAAFWPAHQAPETPDE-----NANVDTFMD 90
            |||.:.|  |:: :|::..:.|..| |:|  ::...|.|....:..|..||     |.|:.|..|
 Frog  1849 YGKDSSIKWLIS-MAISFFESLFITQPLK--VLGFAAFFALVLKKVEPEDEEETTINGNLSTPGD 1910

  Fly    91 NLRLRLRTLRSELM--------ITERHRNERVNLK-YRLITEELWLTGKLFLVYFFMALAFFDEL 146
            ...| |.:.|...:        ||:...|.....| :.||.|.|...|.|::: ..:|....|..
 Frog  1911 PNPL-LGSRRDSNIYQPPPPTDITKMKNNYMKEQKVFALIREILAYLGFLWML-LLVAYGQRDPN 1973

  Fly   147 LYFNTEATELLFQCNHGDAF-GLLSVGDVPDIYFFVVSSLVLAFTDGKNTSGGAPWIHAEG-TRL 209
            .|:..:..|..|.    |.| .|.|..:     ||..::..|.    .|..|..|....:| ::|
 Frog  1974 SYYLNKHIESSFT----DGFEDLCSYQE-----FFTWANTTLI----NNLYGSHPGFITDGNSKL 2025

  Fly   210 LGVVRLRQLRTESNRLGLSLPV-----FTERDFSESWTLPYERVPYTDKYW---------PIYTP 260
            :|..|:||:|.:.:    |.||     .|..:....::|..|.:.:.|..|         .:.:|
 Frog  2026 VGGARMRQIRIKKD----SCPVASVLQSTIDNCRAPYSLDAEEMGHYDGSWNFSAITNATDVNSP 2086

  Fly   261 WLPSVSVARDNLLMGINHVGHMFNYPESKGYKVLLSDTRHKSLKIIDYLMKKNWLDANTTALFMD 325
            |.    ....:.|.|....|.:..| ...||...|.:.|..:.:::..|....|||:.|.|:|::
 Frog  2087 WY----YQNHSKLRGHPTWGKLATY-RGGGYVADLGNERKYAHRVLQDLFSNIWLDSYTRAVFVE 2146

  Fly   326 FSLYNADANTFTVCTLWVE-----KFPYQYPDGHTR-----IESHTFVEQLREFTKFGMLMVFVF 380
            |::|||:.|.|.:..|..|     .|       .||     :..:.|.:.|..|.....::.|:|
 Frog  2147 FTVYNANVNLFCIVKLMFETNALGTF-------FTRANLQSVRLYPFTDGLHIFVVAAEVIYFLF 2204

  Fly   381 VVTWLQFT-KAFFLKVWYDPRQLKTLWVQVD-AMIV----ALSLVV-GMIMSVRDNLVQKMIKSV 438
            |:.::... |....:.|   ...::.|..:: |:|:    |||:.| ..|:..||....:..|: 
 Frog  2205 VIYYMVVQGKRMKAEKW---GYFRSKWNLLELALIIISWSALSVYVKRTILGTRDLRYYQEHKN- 2265

  Fly   439 EIAVVVDFLDFRE----PAQLAYLEDVVTGLAVALVTMRLWKVLQFSATFQLFTKTIAMAWDALL 499
                  :|:.|.|    .|.|.||    ....|.|.|::||.:|:.:....:.|.|:..||..:.
 Frog  2266 ------EFVSFNETAAADAALGYL----IAFLVLLSTIKLWHLLRLNPKLNMITATLRRAWGDIS 2320

  Fly   500 CTFVITVIFIIAIGIATVTING----NYTSNFRDFPKGIVTVTCFAFGYTNLV-YPPDIFYGGEW 559
            ....:.||..:|..||...|.|    :|.:.| |..|.:|::....|.|..:: |.|.:   |.:
 Frog  2321 GFITVIVIMFLAYSIACNLIFGWKLNSYKTVF-DSAKTMVSLQLGIFNYEEVLDYNPVL---GSF 2381

  Fly   560 LGILLYTIMGFVVKYMLINLIVSMMRDQMASVKADRDKKVRQRITFWQ 607
            |.......|.|||..:.|::|:....::....:|..::::.: :..|:
 Frog  2382 LVGSCIIFMTFVVLNLFISVILVAFSEEQKHHQASDEEEIVE-LLLWK 2428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv1NP_649116.1 PKD_channel 165..591 CDD:285288 112/467 (24%)
pkd1l2XP_031756633.1 CLECT 22..147 CDD:214480
Gal_Lectin 163..243 CDD:396628
REJ <615..890 CDD:366875
GPS 1276..1314 CDD:396408
PLAT_polycystin 1385..1504 CDD:238850
PKD_channel 1988..2408 CDD:400395 112/462 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10877
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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