Protein Alignment Chd3 and SYD

DIOPT Version :10

• Sequence 1: NP_649111.1
• Gene: Chd3 / 40111
• FlyBaseID: FBgn0023395
• Length: 892
• Species: Drosophila melanogaster
• Sequence 2: NP_001325348.1
• Gene: SYD / 817375
• AraportID: AT2G28290
• Length: 3575
• Species: Arabidopsis thaliana
• Alignment Length: 862
• Identity: 272/862 - (31%)
• Similarity: 414/862 - (48%)
• Gaps: 167/862 - (19%)

  Fly   108 EKRREYF--IKWH----------------GMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPS 154
            |:::|:|  ::.|                |.:.:..|:....:.|  |...:...||    |:.:
plant   586 ERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRKERL--HREKIDKIQR----EKIN 644

  Fly   155 LEELDDQDGNLH-------ERFYRYGIKPEWLLVQRVINHSEEPNGGTMYL----VKWRELSYND 208
            |.:::|.:|.|.       :|            |::::..:|:      ||    .|.:|.....
plant   645 LLKINDVEGYLRMVQDAKSDR------------VKQLLKETEK------YLQKLGSKLKEAKLLT 691

  Fly   209 SSWERESDSIPGLNQAIALYKKLRSSN---------KGRQRDRPAPTIDLNKKY----------- 253
            |.:|.|:|             :.|:||         ...:.|:....::.|:||
plant   692 SRFENEAD-------------ETRTSNATDDETLIENEDESDQAKHYLESNEKYYLMAHSIKENI 743

  Fly   254 EDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGP 318
            .:||..|  .|.||..:|:.|:.||...:...:..|||||||||||:|.:..:..|.:..:.|||
plant   744 NEQPSSL--VGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 806

  Fly   319 FLISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNV 383
            ||:.||.|.|..|:.|:..|||.::.:.|.|....|              .|..:|.....||||
plant   807 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDER--------------RKLFKEQIVHQKFNV 857

  Fly   384 MLTSYEFI--SVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLE 446
            :||:||::  ..|...|..|.|..:::||.||:::...|....|..|...::|||||||||||||
plant   858 LLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLE 922

  Fly   447 ELFHLLNFLSSGKFNDLQTF--------------QAEFTDVSKEEQ---VKRLHEILEPHMLRRL 494
            ||:.|||||....||..:.|              .||...:|:||.   :.|||::|.|.:||||
plant   923 ELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRL 987

  Fly   495 KADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPY 559
            |..|...:|.|.|.::|.|.|:.||...|.:...    |...|..:..::.|.:|:||..|||||
plant   988 KHKVENELPEKIERLIRCEASAYQKLLMKRVEDN----LGSIGNAKSRAVHNSVMELRNICNHPY 1048

  Fly   560 LFPSAAEEA-TISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLE 623
            |....:||. .|.|.  :.:..:.:..|||::|.:||.:|||.:||||.||.||::|:|:|.:|.
plant  1049 LSQLHSEEVNNIIPK--HFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLT 1111

  Fly   624 GEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHN 688
            .:||:|.|:||...|..|...||.||...|..|:||||.||||:|:||..|||||:||:||||..
plant  1112 LKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQV 1176

  Fly   689 DVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELED 753
            |:||.:||||:||||.|::.||.|.|||||::...|:||:.:.:..:..|.  ...|.|.::.::
plant  1177 DLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGF--FDNNTSAEDRKE 1239

  Fly   754 ILRFGTEDLFKDGKSE--AIHYDDKAVADLLDRTNRGIE-----EKESWANEYLSSFKVASYATK 811
            .|    |.|.::.|.|  |...||.|:.||:.|....|:     :|:...|| :.::....:...
plant  1240 YL----ESLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKENE-METWNTLVHGPG 1299

  Fly   812 EDHEEH-----------DDYNNDAENTDPFYWENLMGKSQPKLPKK-----QKKQSQQSQVDVES 860
            .|...|           ||..        ..:|.:.....|.:.|:     ::|......:|...
plant  1300 SDSFAHIPSIPSRLVTEDDLK--------LLYETMKLNDVPMVAKESTVGMKRKDGSMGGLDTHQ 1356

  Fly   861 IMGKGKRIRKEIDYSNQ 877
             .|:|||.|:...|..:
plant  1357 -YGRGKRAREVRSYEEK 1372

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Chd3	NP_649111.1	PHD2_CHD_II	37..79	CDD:277007
		CD_CSD	82..146	CDD:475127	8/55 (15%)
		CD2_tandem_CHD3-4_like	176..230	CDD:349309	10/57 (18%)
		PLN03142	266..>768	CDD:215601	207/521 (40%)
SYD	NP_001325348.1	QLQ	277..310	CDD:214931
		PLN03142	604..>1216	CDD:215601	233/670 (35%)
		SnAC	1282..1369	CDD:464219	16/96 (17%)
		PHA03307	1491..>1819	CDD:223039
		rne	<3168..3342	CDD:236766