DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd3 and chd4b

DIOPT Version :9

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_021322613.1 Gene:chd4b / 560622 ZFINID:ZDB-GENE-030131-4532 Length:1953 Species:Danio rerio


Alignment Length:963 Identity:510/963 - (52%)
Similarity:655/963 - (68%) Gaps:106/963 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DPD--------WKTP-----------------GKASKD--KRPKTNAKKQKFRDEEYCKVCSDGG 45
            |||        |..|                 |:...|  :|...:.:::.....|:|:||.|||
Zfish   403 DPDMERAPEGTWSCPHCEKEGIQWEAREESSEGEEENDDGRRDDGDVEEEDDHHMEFCRVCKDGG 467

  Fly    46 DLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRCI--PLPGKAEKILSWRWA-------LDRSVE 101
            :|||||:|||.||..||:|||..||.|:||||||:  ||.||.:|:|:|||.       :.|..:
Zfish   468 ELLCCDTCPSSYHLHCLNPPLPDIPNGEWICPRCLSPPLKGKVQKVLTWRWGEAPPPMPVPRPAD 532

  Fly   102 LRTSK-------GEKRREYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPSLEEL- 158
            |....       |.|.||:|:||...|||||.|:.|.|:.|:...|..::||::|||||...|: 
Zfish   533 LPAEAPDPPPMIGRKEREFFVKWCNKSYWHCSWVQELQLELNCQVMFRNYQRKTDMEEPPNLEMG 597

  Fly   159 --DDQD------------GNLHERFYRYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDS 209
              .|:|            ..:.:::.|:|:|.|||.:.|::|||.:......||:|||:|.|:.|
Zfish   598 AEGDEDKSCKRKNKDPFYARMEDKYGRFGVKIEWLFIHRILNHSVDKKNNVHYLIKWRDLPYDQS 662

  Fly   210 SWERESDSIPGLNQAIALY---------------KKLRSSNKGRQRDRPA--PTIDLNKKYEDQP 257
            :||.|...:|........|               ||::.. |.|:.:||.  |.:|...|::.||
Zfish   663 TWESEDMDVPDFETYKQHYWNHRELMLGEEGRPGKKMKKV-KVRKTERPPANPVVDPTIKFDRQP 726

  Fly   258 VFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLIS 322
            .:|...|..|||:|:||::|||:||.||..||||||||||||:||.||||||:||||.:||||:|
Zfish   727 DYLDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVS 791

  Fly   323 VPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTK-----TMRENQTQYKFN 382
            .||||:.|||||.|:|||::|.|||||.|.:|||||::|.:||:...:     :..:.:...||:
Zfish   792 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEAAVKFH 856

  Fly   383 VMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEE 447
            |:|||||.|::|.|.||.||||.|||||||||::|||||||:|:.|.:.:|||||||||||||||
Zfish   857 VLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEE 921

  Fly   448 LFHLLNFLSSGKFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRV 512
            ||||||||:..:||:|:.|..||.|::||:|:|:||::|.|||||||||||.|.||.|:|.||||
Zfish   922 LFHLLNFLTPERFNNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRV 986

  Fly   513 ELSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYE 577
            |||.||||:||:|||:||:|||.:|||...||||::|||:||||||||||:||.||...|:|:|:
Zfish   987 ELSPMQKKYYKYILTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPTAATEAPKMPNGMYD 1051

  Fly   578 MSSLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQ 642
            .|:||||||||.||.||||:||...||||:||||||||::||.|||.|||:|:||||.:.|.:||
Zfish  1052 GSALTKASGKLMLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQ 1116

  Fly   643 KAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMI 707
            :||||||.|.:..||||||||||||||||||||||||:|||||||||:||||||||:||.|||||
Zfish  1117 EAIDRFNAPGAPQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMI 1181

  Fly   708 YRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRFGTEDLFKD--GK--- 767
            |||||..||||||.||||.||||||||||||:|....:.||.||:|||:||||.||||  |:   
Zfish  1182 YRFVTKASVEERITQVAKKKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEQLFKDELGEGDN 1246

  Fly   768 ----SEAIHYDDKAVADLLDRTNRGIEEKESWA-NEYLSSFKVASYATKEDHEEHDDYNND---- 823
                |..|||||||:..||||.....|:.|..: ||||||||||.|..|::.||.:|.:.:    
Zfish  1247 KEEDSSVIHYDDKAIDRLLDRNQDATEDTELQSMNEYLSSFKVAQYVVKDEDEEEEDVDREIIKQ 1311

  Fly   824 AENTDPFYWENLMGKSQPKLPKKQKKQSQQSQVDVESIMGKGKRIRKEIDYSN 876
            .|:.||.|||.|:           :...:|.|.|:...:|||||.||.::|::
Zfish  1312 EESVDPDYWEKLL-----------RHHYEQQQEDLARHLGKGKRPRKPVNYND 1353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007 28/41 (68%)
CHROMO 85..147 CDD:237991 26/75 (35%)
CHROMO 181..233 CDD:214605 19/66 (29%)
SNF2_N 270..561 CDD:278600 193/295 (65%)
DEXDc 288..440 CDD:238005 98/156 (63%)
Helicase_C 585..700 CDD:278689 88/114 (77%)
chd4bXP_021322613.1 CHDNT 155..210 CDD:311840
PHD1_CHD_II 377..419 CDD:277006 5/15 (33%)
PHD2_CHD_II 459..501 CDD:277007 28/41 (68%)
CHROMO <546..585 CDD:237991 17/38 (45%)
CHROMO 634..686 CDD:214605 17/51 (33%)
SNF2_N 734..>1274 CDD:331286 362/539 (67%)
DUF1087 1308..1358 CDD:310812 18/57 (32%)
DUF1086 1397..1531 CDD:310809
Neuromodulin_N <1534..>1738 CDD:331332
CHDCT2 1769..1939 CDD:311841
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 438 1.000 Domainoid score I537
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35578at33208
OrthoFinder 1 1.000 - - FOG0000546
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101931
Panther 1 1.100 - - O PTHR45623
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.780

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