Sequence 1: | NP_649111.1 | Gene: | Chd3 / 40111 | FlyBaseID: | FBgn0023395 | Length: | 892 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_021322613.1 | Gene: | chd4b / 560622 | ZFINID: | ZDB-GENE-030131-4532 | Length: | 1953 | Species: | Danio rerio |
Alignment Length: | 963 | Identity: | 510/963 - (52%) |
---|---|---|---|
Similarity: | 655/963 - (68%) | Gaps: | 106/963 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 DPD--------WKTP-----------------GKASKD--KRPKTNAKKQKFRDEEYCKVCSDGG 45
Fly 46 DLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRCI--PLPGKAEKILSWRWA-------LDRSVE 101
Fly 102 LRTSK-------GEKRREYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPSLEEL- 158
Fly 159 --DDQD------------GNLHERFYRYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDS 209
Fly 210 SWERESDSIPGLNQAIALY---------------KKLRSSNKGRQRDRPA--PTIDLNKKYEDQP 257
Fly 258 VFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLIS 322
Fly 323 VPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTK-----TMRENQTQYKFN 382
Fly 383 VMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEE 447
Fly 448 LFHLLNFLSSGKFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRV 512
Fly 513 ELSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYE 577
Fly 578 MSSLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQ 642
Fly 643 KAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMI 707
Fly 708 YRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRFGTEDLFKD--GK--- 767
Fly 768 ----SEAIHYDDKAVADLLDRTNRGIEEKESWA-NEYLSSFKVASYATKEDHEEHDDYNND---- 823
Fly 824 AENTDPFYWENLMGKSQPKLPKKQKKQSQQSQVDVESIMGKGKRIRKEIDYSN 876 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Chd3 | NP_649111.1 | PHD2_CHD_II | 37..79 | CDD:277007 | 28/41 (68%) |
CHROMO | 85..147 | CDD:237991 | 26/75 (35%) | ||
CHROMO | 181..233 | CDD:214605 | 19/66 (29%) | ||
SNF2_N | 270..561 | CDD:278600 | 193/295 (65%) | ||
DEXDc | 288..440 | CDD:238005 | 98/156 (63%) | ||
Helicase_C | 585..700 | CDD:278689 | 88/114 (77%) | ||
chd4b | XP_021322613.1 | CHDNT | 155..210 | CDD:311840 | |
PHD1_CHD_II | 377..419 | CDD:277006 | 5/15 (33%) | ||
PHD2_CHD_II | 459..501 | CDD:277007 | 28/41 (68%) | ||
CHROMO | <546..585 | CDD:237991 | 17/38 (45%) | ||
CHROMO | 634..686 | CDD:214605 | 17/51 (33%) | ||
SNF2_N | 734..>1274 | CDD:331286 | 362/539 (67%) | ||
DUF1087 | 1308..1358 | CDD:310812 | 18/57 (32%) | ||
DUF1086 | 1397..1531 | CDD:310809 | |||
Neuromodulin_N | <1534..>1738 | CDD:331332 | |||
CHDCT2 | 1769..1939 | CDD:311841 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 438 | 1.000 | Domainoid score | I537 |
eggNOG | 1 | 0.900 | - | - | E2759_KOG0383 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D35578at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000546 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_101931 | |
Panther | 1 | 1.100 | - | - | O | PTHR45623 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
8 | 7.780 |