DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chd3 and chd4a

DIOPT Version :10

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_021323760.1 Gene:chd4a / 558344 ZFINID:ZDB-GENE-041111-187 Length:1931 Species:Danio rerio


Alignment Length:936 Identity:507/936 - (54%)
Similarity:650/936 - (69%) Gaps:81/936 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WKTPGKASKDKRPKTNAKKQKFRDE--EYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGD 73
            |:....||:.:.......:.:..|.  |:|:||.|||:|||||||||.||..||:|||..||.|:
Zfish   405 WEAREDASEGEEDNEAGGEAEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIPNGE 469

  Fly    74 WICPRCI--PLPGKAEKILSWRWA-------LDRSVELRTS-------KGEKRREYFIKWHGMSY 122
            ||||||.  .:.||.:|||:|||.       :.|..:|.|.       .|...||:|:||..|||
Zfish   470 WICPRCTCPSMKGKVQKILTWRWTEPPPPTPVPRPSDLPTDAPDPTPLAGRPEREFFVKWQNMSY 534

  Fly   123 WHCEWIPEGQMLLHHASMVASFQRRSDMEEP--------SLEELDDQD-------GNLHERFYRY 172
            |||.|:.|.|:.:|...|..::||::||:||        ..||..|:.       ..:.|::||:
Zfish   535 WHCSWVTELQLEIHCQVMFRNYQRKNDMDEPPPIDFGGEGEEEKSDKRKKKDPTYARMEEKYYRF 599

  Fly   173 GIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDSSWERESDSIPGLNQAIALY--------- 228
            |||.||:::.|::|||.:......||:|||:|:|:.::||.|...:|..:.....|         
Zfish   600 GIKMEWMVIHRILNHSVDKKNNCHYLIKWRDLTYDQATWELEDMDLPDYDTYKLQYWNHRELMMG 664

  Fly   229 ------KKLRSSNKGRQRDRPA--PTIDLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQG 285
                  ||::...|.|:.|||.  |.:|...|:|.||.:|...|..|||:|:||::|||:||.||
Zfish   665 DEGKPGKKIKIKGKMRKLDRPPENPVVDPTIKFERQPDYLDTTGGTLHPYQLEGLNWLRFSWAQG 729

  Fly   286 IPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGG 350
            ..||||||||||||:||.||||||:||||.:||||:|.||||:.|||||.|:|||::|.|||||.
Zfish   730 TDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGD 794

  Fly   351 KTARAVIRKHEISFEEVTTK-----TMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDE 410
            |.:|||||::|.|||....:     :..:.:...||:|:|||||.|::|.|.||.||||.|||||
Zfish   795 KDSRAVIRENEFSFENNAIRGGKKPSKMKKEASVKFHVLLTSYELITIDTAVLGSIDWACLVVDE 859

  Fly   411 AHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSK 475
            ||||::|||||||||:.|.:.:|||||||||||||||||||||||:..:|::|:.|..||.|::|
Zfish   860 AHRLKNNQSKFFRILNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFSNLEGFLEEFADIAK 924

  Fly   476 EEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGGR 540
            |:|:|:||::|.|||||||||||.|.||.|:|.|||||||.||||:||.|||:||:|||.:|||.
Zfish   925 EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTRNFEALNTRGGGN 989

  Fly   541 VCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNHRV 605
            ..||||::|||:||||||||||:||.||...|:|:||...|||:||||.||.|||::||...|||
Zfish   990 QVSLLNVVMDLKKCCNHPYLFPAAAMEAAKMPNGMYEGGGLTKSSGKLLLLQKMLRKLKEGGHRV 1054

  Fly   606 LLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGIN 670
            |:||||||||::||.|||.|||:|:||||.|.|.:||:||||||.|.:..|||||||||||||||
Zfish  1055 LIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGIN 1119

  Fly   671 LATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVV 735
            |||||||:|:|||||||||:||||||||:||.||||||||||..||||||.||||.|||||||||
Zfish  1120 LATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVV 1184

  Fly   736 RPGMGGMTTNFSKDELEDILRFGTEDLFKD-GKSE---------AIHYDDKAVADLLDRTNRGIE 790
            |||:|..|.:.||.||:|||:||||:|||| |:.|         .|||||||:..||||.....:
Zfish  1185 RPGLGSKTGSMSKQELDDILKFGTEELFKDEGEGENKEGQEDSSVIHYDDKAIDRLLDRNQDATD 1249

  Fly   791 EKESWA-NEYLSSFKVASYATKEDHEEHDDYNND----AENTDPFYWENLMGKSQPKLPKKQKKQ 850
            :.|..: ||||||||||.|..|::.|..::...:    .|:.||.|||.|:           :..
Zfish  1250 DTELQSMNEYLSSFKVAQYVVKDEEEAEEEVQREIIKQEESVDPDYWEKLL-----------RHH 1303

  Fly   851 SQQSQVDVESIMGKGKRIRKEIDYSN 876
            .:|.|.|:...:||||||||:::|::
Zfish  1304 YEQQQEDLARNLGKGKRIRKQVNYND 1329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007 29/41 (71%)
CD_CSD 82..146 CDD:475127 28/77 (36%)
CD2_tandem_CHD3-4_like 176..230 CDD:349309 18/68 (26%)
PLN03142 266..>768 CDD:215601 350/507 (69%)
chd4aXP_021323760.1 CHDNT 153..206 CDD:462357
kgd 196..>280 CDD:476867
PHD1_CHD_II 356..398 CDD:277006
PHD2_CHD_II 433..475 CDD:277007 29/41 (71%)
CD1_tandem_CHD3-4_like 480..558 CDD:349314 28/77 (36%)
CD2_tandem_CHD3-4_like 604..657 CDD:349309 18/52 (35%)
PLN03142 709..>1250 CDD:215601 362/540 (67%)
DEXHc_CHD4 711..942 CDD:350814 147/230 (64%)
DUF1087 1280..1327 CDD:461922 18/57 (32%)
CHDII_SANT-like 1368..1502 CDD:461920
PTZ00121 <1547..>1713 CDD:173412
CHDCT2 1747..1892 CDD:462358
Blue background indicates that the domain is not in the aligned region.

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