DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd3 and Mi-2

DIOPT Version :9

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster


Alignment Length:939 Identity:623/939 - (66%)
Similarity:712/939 - (75%) Gaps:93/939 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WKTP-----GKASKDKRPKTNAKKQKFRDEEYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIP 70
            |..|     |.|::::....:        :|:|:||.|||:|||||||||.||..||:|||.:||
  Fly   417 WSCPHCEADGGAAEEEDDDEH--------QEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIP 473

  Fly    71 KGDWICPRCI--PLPGKAEKILSWRWALDRSVE--LRTSKGEKR-----REYFIKWHGMSYWHCE 126
            .|||.||||.  ||.||||||::|||| .||.:  ..||||.|.     ||||||||.|||||||
  Fly   474 DGDWRCPRCSCPPLTGKAEKIITWRWA-QRSNDDGPSTSKGSKNSNSRVREYFIKWHNMSYWHCE 537

  Fly   127 WIPEGQMLLHHASMVASFQRRSDMEEP-----SLEELD------------------DQDGNLHER 168
            |:||.|:.:||..|:.||||:.|||||     ||:|.|                  |....|.||
  Fly   538 WVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEADTRYKRIQRHKDKVGMKANDDAEVLEER 602

  Fly   169 FYRYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDSSWERESDSIPGLNQAIALYKKLRS 233
            ||:.|:|||||:|||||||....:|.||||||||||.|:.|:||.|.|.|.||.|||..|:.||:
  Fly   603 FYKNGVKPEWLIVQRVINHRTARDGSTMYLVKWRELPYDKSTWEEEGDDIQGLRQAIDYYQDLRA 667

  Fly   234 -------------SNKGRQ--------RDRPA---------PTIDLNKKYEDQPVFLKEAGLKLH 268
                         |.|||:        .|||.         ||.||.|||||||.||:..|::||
  Fly   668 VCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLEGTGMQLH 732

  Fly   269 PFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWER 333
            |:||||::||||||||||.||||||||||||||||.|||||:||||||||||::||||||.||||
  Fly   733 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWER 797

  Fly   334 ELELWAPELYCVTYVGGKTARAVIRKHEISFEEVT---TKTMRENQTQYKFNVMLTSYEFISVDA 395
            |.|||||:.||:||:|.|.:|||||::|:||||..   :|..|...|||||||:|||||.||:||
  Fly   798 EFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELISMDA 862

  Fly   396 AFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKF 460
            |.||.||||.|||||||||:||||||||||:.|.|.|||||||||||||||||||||||||..||
  Fly   863 ACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKF 927

  Fly   461 NDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHI 525
            ||||.||.||.|||||||||||||:|.||||||||.||||:||.|||||||||||:|||||||.|
  Fly   928 NDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFI 992

  Fly   526 LTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDL 590
            ||||::|||.|.||..|||:||||||:|||||||||||||||||.:..||||::|||||:|||.|
  Fly   993 LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVL 1057

  Fly   591 LSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEH 655
            ||||||||||.|||||:||||||||::||.|||||.|:|:||||.|.|.|||:||||||.|.::.
  Fly  1058 LSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQ 1122

  Fly   656 FVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERI 720
            ||||||||||||||||||||||||:|||||||||:||||||||:||..|||||||||.||||||:
  Fly  1123 FVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERV 1187

  Fly   721 MQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRFGTEDLFK-DGKSEAIHYDDKAVADLLDR 784
            .||||.|||||||||||||||...||:|.||:|||||||||||| |.|.|||||||||||:||||
  Fly  1188 TQVAKRKMMLTHLVVRPGMGGKGANFTKQELDDILRFGTEDLFKEDDKEEAIHYDDKAVAELLDR 1252

  Fly   785 TNRGIEEKESWANEYLSSFKVASYATKEDHEEHDD--YNNDAENTDPFYWENLMGKSQPKLPKKQ 847
            ||||||||||||||||||||||||||||:.||.:.  ...||||:||.||..|:           
  Fly  1253 TNRGIEEKESWANEYLSSFKVASYATKEEEEEEETEIIKQDAENSDPAYWVKLL----------- 1306

  Fly   848 KKQSQQSQVDVESIMGKGKRIRKEIDYSN 876
            :...:|.|.||...:|||||:||:::|::
  Fly  1307 RHHYEQHQEDVGRSLGKGKRVRKQVNYTD 1335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007 29/41 (71%)
CHROMO 85..147 CDD:237991 41/68 (60%)
CHROMO 181..233 CDD:214605 32/51 (63%)
SNF2_N 270..561 CDD:278600 231/293 (79%)
DEXDc 288..440 CDD:238005 116/154 (75%)
Helicase_C 585..700 CDD:278689 93/114 (82%)
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335
PHD1_CHD_II 380..422 CDD:277006 2/4 (50%)
PHD2_CHD_II 440..482 CDD:277007 29/41 (71%)
CHROMO 490..558 CDD:237991 41/68 (60%)
CHROMO 615..667 CDD:214605 32/51 (63%)
SNF2_N 734..1028 CDD:278600 231/293 (79%)
DEXDc 751..907 CDD:238005 116/155 (75%)
Helicase_C 1053..1167 CDD:278689 93/113 (82%)
DUF1087 <1292..1337 CDD:283996 21/55 (38%)
DUF1086 1380..1517 CDD:283992
CHDCT2 1756..1927 CDD:285336
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45471562
Domainoid 1 1.000 296 1.000 Domainoid score I346
eggNOG 1 0.900 - - E2759_KOG0383
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35578at33208
OrthoFinder 1 1.000 - - FOG0000546
OrthoInspector 1 1.000 - - otm46623
orthoMCL 1 0.900 - - OOG6_101931
Panther 1 1.100 - - P PTHR45623
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.750

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