DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chd3 and chd1l

DIOPT Version :10

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_956607.1 Gene:chd1l / 393283 ZFINID:ZDB-GENE-040426-892 Length:1026 Species:Danio rerio


Alignment Length:647 Identity:231/647 - (35%)
Similarity:353/647 - (54%) Gaps:71/647 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 LKEAGL---KLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCR--GPF 319
            ||:.||   .|.|:|::||.||..........||.||||||||.||:..|  .:..|..:  |||
Zfish    25 LKKWGLGAIHLRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLL--AYARGSLKMNGPF 87

  Fly   320 LISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVM 384
            |:..||:.|.||.:|||.:.|.|..:.|.|.|..||.::::              .::..:|:|:
Zfish    88 LVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQN--------------LKSDPRFHVL 138

  Fly   385 LTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELF 449
            ||:||....||.:|....|..|||||||||::.:|...:.|.::.:|:::||||||:||||:|::
Zfish   139 LTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVY 203

  Fly   450 HLLNFLSSGKF--NDLQTFQAEFTDVSKEEQ-VKRLHEILEPHMLRRLKADVLKSMPPKSEFIVR 511
            .||.|:....|  ..::.|...:.|:..|.. |..||::|:|.:|||:||:|...:|.|:|.:|.
Zfish   204 SLLTFIQPSVFLPEAVEDFVNAYADIQTEPALVDELHQVLQPFLLRRVKAEVAAELPKKTELVVF 268

  Fly   512 VELSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLY 576
            ..||::||::||.||.::..|.......:. .|||::|.||||.:|||||.....|.       :
Zfish   269 HGLSALQKRYYKAILMRDLDAFRTDQSTKT-RLLNVLMQLRKCVDHPYLFDGVEPEP-------F 325

  Fly   577 EMSS-LTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDL 640
            ||.. |.:|||||.||..||..|:...|.||||||||:||::|:.:||..||.|:|:|||::|:.
Zfish   326 EMGEHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEE 390

  Fly   641 RQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKV 705
            |..||..|:  ..:.|:|||||:|||:|:||..|||||..|.|:||.||:||.:||||:||.:.|
Zfish   391 RNLAIKNFS--TKDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPV 453

  Fly   706 MIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPG----MGGMTTNFSKDELEDILRFGTEDLFKDG 766
            .:.|.:..:::||.|...|..|:.||..|:..|    :....:..|..:|.:||:||.:.|....
Zfish   454 KVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQSAASGLQLSEILKFGVDKLLSSE 518

  Fly   767 KSEAIHYDDKAVADLLDRTNRGIEEKESWANEYLSSFKVASYATKEDH----EEHDDYNNDAENT 827
            :|.....|.:.:                     |...:...:.|.|:|    |.:::.:.|.|..
Zfish   519 ESSVQDVDLQLI---------------------LGQSRDGQWLTDEEHAKLNESNEEEDEDMEGQ 562

  Fly   828 DPFYWENLMGKSQPKLPKKQKKQS-----QQSQVDVESIMGKGKRIRKEIDYSNQYPSPNRA 884
            :..|:  ..||...|.|..:.:::     ::...::|....:|:.:|.:...|...|..|.|
Zfish   563 NHMYY--FEGKDYSKDPSAEDEKTFELLLEKQFAEMEDAEKEGRALRNKAGVSLSGPLINPA 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CD_CSD 82..146 CDD:475127
CD2_tandem_CHD3-4_like 176..230 CDD:349309
PLN03142 266..>768 CDD:215601 206/511 (40%)
chd1lNP_956607.1 PLN03142 35..>547 CDD:215601 212/558 (38%)
DEAH box 163..166 2/2 (100%)
Regulatory linker segment (RLS). /evidence=ECO:0000250|UniProtKB:Q86WJ1 594..628 7/29 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 606..655 5/17 (29%)
Required for ATPase activity. /evidence=ECO:0000250|UniProtKB:Q86WJ1 608..666 4/15 (27%)
Macro_Poa1p-like_SNF2 709..859 CDD:394880
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 877..929
BRCT 931..1016 CDD:469589
Blue background indicates that the domain is not in the aligned region.

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