DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd3 and CG7376

DIOPT Version :10

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_648034.1 Gene:CG7376 / 38715 FlyBaseID:FBgn0035689 Length:1270 Species:Drosophila melanogaster


Alignment Length:383 Identity:93/383 - (24%)
Similarity:154/383 - (40%) Gaps:78/383 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   361 EISFEEVTTKTMRENQ--------TQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSN 417
            ||||.:.....:|..|        .|.|..::....:.:.....:...:::.....||..     
  Fly   913 EISFIKSIFAFLRSKQDFSEWKEECQSKLELLSCLQDLVKFQIKYWIEVEYMVKAFDELE----- 972

  Fly   418 QSKFFRILSKYRIGYKLLLTGTP-LQNNLE----ELFHLLNFLSSGKFNDLQTFQAEFTDV-SKE 476
                   :.|.||    |||..| .|:|..    :|...|.|   .::| |||.|..||.: .:.
  Fly   973 -------MCKMRI----LLTDDPEEQSNYRILACQLDEQLQF---NQYN-LQTSQLNFTRLCGRL 1022

  Fly   477 EQVKRLHE--ILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGG 539
            :.:|.|.|  ..:|..:.:.:.||...|.....|:.:..|.||::|             |.:.|.
  Fly  1023 KYLKHLKEDSADKPCPICQTQDDVRYVMMVCGHFVCQHCLDSMRRK-------------NGRAGV 1074

  Fly   540 RVCSLLNIMMDLRKCC--NHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADN 602
            ..|.|          |  :.|.|:.|....|..|..|.:.    ||.|..::|:.|    :|.:|
  Fly  1075 TKCPL----------CRQDSPQLYYSVRPGAHKSIIGDFS----TKISSVVELVLK----IKGEN 1121

  Fly   603 --HRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAG 665
              .::::|||...:|..:...|...|.|:       :.....|..|.|.:|:|.....|:....|
  Fly  1122 EQEKIIVFSQWQAILIEIARALSLNGIQF-------RNKCTNKDFDDFKNPLSNVTCLLMPLSKG 1179

  Fly   666 GLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQV 723
            ..|:||..|..|.:.:...||.::.||..|.||.|||:...::||:.:.::||.|:.:
  Fly  1180 SKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQKRPTKVHRFIVNETIEENILSL 1237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CD_CSD 82..146 CDD:475127
CD2_tandem_CHD3-4_like 176..230 CDD:349309
PLN03142 266..>768 CDD:215601 93/383 (24%)
CG7376NP_648034.1 DEXQc_SHPRH 160..513 CDD:350828
PHD_SF 281..320 CDD:473978
TPR 636..669 CDD:197478
RING_Ubox 1036..1082 CDD:473075 14/68 (21%)
SF2_C_SNF 1104..1225 CDD:350180 37/135 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.