DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chd3 and fft3

DIOPT Version :10

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_593617.1 Gene:fft3 / 2541531 PomBaseID:SPAC25A8.01C Length:922 Species:Schizosaccharomyces pombe


Alignment Length:622 Identity:191/622 - (30%)
Similarity:296/622 - (47%) Gaps:103/622 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 WLLVQRVINHSEEPNGGTMYLVKWRELSYNDSSWERESDSIPGLNQAIALYKKLRSSNKGRQRDR 242
            :.:|..:|...|:..|.....::...||...:|.|.|:        ::..:.:::|..      .
pombe   317 YFVVDALIRQCEQLGGKIQRGIEAWGLSNTATSDEGET--------SLVNFDQMKSFG------T 367

  Fly   243 PAPTIDLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLY 307
            ||     |..:...|.......:||..:||.|::||...:...:..|||||||||||.||:.| :
pombe   368 PA-----NSSFITTPPASFSPDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAF-F 426

  Fly   308 SLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTM 372
            ||..:.:..||.|:..|.||:.||.||...:.|:|....|.|.:..|..||:             
pombe   427 SLLMDKNINGPHLVIAPASTMENWLREFAKFCPKLKIELYYGSQVEREEIRE------------- 478

  Fly   373 RENQTQYKFNVMLTSYEFIS---VDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKL 434
            |.|..:..:|||||:|...:   .|..||....:...|.||.|.|::..|:.:|.|......:::
pombe   479 RINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRV 543

  Fly   435 LLTGTPLQNNLEELFHLLNFLSSGKFN-DLQTFQAEFT-------DVSK----EEQVKRLHEILE 487
            |||||||||||:||..||.|:....|: .|::....||       |..:    |::|.|...::.
pombe   544 LLTGTPLQNNLKELISLLAFILPHVFDYGLKSLDVIFTMKKSPESDFERALLSEQRVSRAKMMMA 608

  Fly   488 PHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFY---------KHILTKNFKALNQKGGGRVCS 543
            |.:|||.|:.||.::|.|:..|...|.|..:::.|         ..:|.:|....|......:..
pombe   609 PFVLRRKKSQVLDALPKKTRIIEFCEFSEEERRRYDDFASKQSVNSLLDENVMKTNLDTNANLAK 673

  Fly   544 LLN----IMMDLRKCCNHPYLFP---------------------SAAEEATISPSGLY----EMS 579
            ..:    :::.|||..:||.||.                     ..|.|..|.....|    |:.
pombe   674 KKSTAGFVLVQLRKLADHPMLFRIHYKDDILRQMAKAIMNEPQYKKANELYIFEDMQYMSDIELH 738

  Fly   580 SLT----------------KASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQ 628
            :|.                ..:.|:..|.|:|.....:..||:||||.|::|::|:..::....:
pombe   739 NLCCKFPSINSFQLKDEPWMDATKVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLK 803

  Fly   629 YDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAF 693
            :.|.|||.:.|.||..||:|....|.: ||||||:|||.|||||.|:.||::|..:||.:|:||.
pombe   804 FLRFDGSTQVDFRQDLIDQFYADESIN-VFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAE 867

  Fly   694 SRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMML 730
            .||||:||||:|.:|:||..:::||.|.::|..|:.|
pombe   868 DRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKIAL 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CD_CSD 82..146 CDD:475127
CD2_tandem_CHD3-4_like 176..230 CDD:349309 9/51 (18%)
PLN03142 266..>768 CDD:215601 177/534 (33%)
fft3NP_593617.1 HepA 275..904 CDD:440319 190/620 (31%)
Blue background indicates that the domain is not in the aligned region.

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