DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd3 and Ercc6l

DIOPT Version :10

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:NP_666347.2 Gene:Ercc6l / 236930 MGIID:2654144 Length:1240 Species:Mus musculus


Alignment Length:821 Identity:203/821 - (24%)
Similarity:351/821 - (42%) Gaps:195/821 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 QDGNLHERFYRYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDSSWERESDSIPGLNQAI 225
            ::|:|.|....:.:..:....::|::.          :.|.:|.....:..|.:.:.|...:..:
Mouse    33 KNGDLEESLKLFNLAKDIFPTKKVMSR----------IQKLQEALEQLAEEEDDDEFIDVCSSGL 87

  Fly   226 ALYKKLRSSNKGRQRDRPAPTIDLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIP-TI 289
            .||::|                     ||           ||...|.||:::|...:..|.. .|
Mouse    88 LLYREL---------------------YE-----------KLFEHQKEGIAFLYSLYKDGRKGGI 120

  Fly   290 LADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTAR 354
            |||:||||||:|.:.||..:| :.......|:.:|.:.:..|..|...|.|.:...|:.|...:.
Mouse   121 LADDMGLGKTVQIIAFLSGMF-DASLVNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSSKSE 184

  Fly   355 AVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVD----AAFLG-CIDWAALVVDEAHRL 414
                           :|....:.|.:..|::|:|:.:..:    |:|.| ...|..:::||||::
Mouse   185 ---------------RTRSLTRIQQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAHKI 234

  Fly   415 RSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGK-FNDLQTFQAEF-------- 470
            :|..:|............:|||||||:||||:||:.|.:|...|. ...|:||:.|:        
Mouse   235 KSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAR 299

  Fly   471 -TDVSKEEQV------KRLHEILEPHMLRRLKADV------------------------LKSMPP 504
             .|.:..|:.      :.|.||::|:.|||.|.:|                        :.|:..
Mouse   300 EKDATPGEKALGLKISENLMEIIKPYFLRRTKEEVQTKKADNPEARLGEKNPAGEAICDMFSLAR 364

  Fly   505 KSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMD----------LRKCCNHPY 559
            |::.||.:.|..:|::.|     :.|.:|:.        :..::|:          |:|.|:||.
Mouse   365 KNDLIVWIRLLPLQEEIY-----RKFVSLDH--------IKELLMETRSPLAELGVLKKLCDHPR 416

  Fly   560 LFPSAA------EEATISPSGLYEM--------------SSLTKASGKLDLLSKMLKQLKADNHR 604
            |..:.|      ..||.|.....|.              .:|.:.|||:..|..:|::|:.:.|:
Mouse   417 LLSARACRLLNLGTATFSAQDENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQ 481

  Fly   605 VLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDL--RQKAIDRFNDPVSEHFVFLLSTRAGGL 667
            .|:|||..|:||::|..|:.:.::..||||::. .|  |:|.|..|... .|:.||||:|:.||:
Mouse   482 TLVFSQSIKILNIIERLLKNKHFKTLRIDGTVT-HLWEREKRIQLFQQN-KEYSVFLLTTQVGGV 544

  Fly   668 GINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERI--MQVAKHKMML 730
            |:.|..|..|:|||..|||..|.||..|.:|:|||:.|::||.:|..:|||:|  .||.|..:  
Mouse   545 GLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSL-- 607

  Fly   731 THLVVRPGMGGMTT---NFSKDELEDILRFGTEDLFKDGKSEAIHYDDKAVADLLDRTNRGIEEK 792
                :|...|....   .|:|.||:::...|  ||.|......:        ..|....|..:||
Mouse   608 ----IRQTTGEKKNPFRYFTKQELKELFTVG--DLQKSATQMQL--------QCLHAAQRRSDEK 658

  Fly   793 ESWANEYLSSFKVASYATKEDHE----------EHDDYNNDAENTDPFYWENLMGKSQPKLPKKQ 847
               .:|:::...:...|...||:          |..|...|::     |....:.|:|..:..:.
Mouse   659 ---LDEHIAYLHLLGIAGISDHDLMFTRDLSVKEELDMLEDSQ-----YIHQRVQKAQFLVESES 715

  Fly   848 KKQSQQSQVDVESIMGKGKRI-----RKEIDYSNQYPSPNR 883
            :...|:....:|....|.:..     :|..:::...|.|:|
Mouse   716 QNTVQRQTTGIEETWLKAQEFPSQQKKKGTEFNKPQPQPSR 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CD_CSD 82..146 CDD:475127
CD2_tandem_CHD3-4_like 176..230 CDD:349309 7/53 (13%)
PLN03142 266..>768 CDD:215601 169/584 (29%)
Ercc6lNP_666347.2 TPR 1 21..54 3/20 (15%)
HepA <96..613 CDD:440319 160/553 (29%)
DEXHc_ERCC6L 97..329 CDD:350759 70/247 (28%)
DEAH box 229..232 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 736..760 4/21 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 778..813
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 845..879
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 974..1085
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1104..1185
TPR 2 1191..1224
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.