DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chd3 and Phf21a

DIOPT Version :10

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_011237664.1 Gene:Phf21a / 192285 MGIID:2384756 Length:695 Species:Mus musculus


Alignment Length:93 Identity:38/93 - (40%)
Similarity:51/93 - (54%) Gaps:18/93 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 EEYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC----------IPLPGKAEKI 89
            |::|.||...|.||.||:|..|||..||.||||:||||.||||||          ||.||....:
Mouse   504 EDFCSVCRKSGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPRCQDQMLKKEEAIPWPGTLAIV 568

  Fly    90 LSWRWALDRSVELRTSKGEKRREYFIKW 117
            .|:       :..:.:| |:.::..:||
Mouse   569 HSY-------IAYKAAK-EEEKQKLLKW 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007 26/41 (63%)
CD_CSD 82..146 CDD:475127 7/36 (19%)
CD2_tandem_CHD3-4_like 176..230 CDD:349309
PLN03142 266..>768 CDD:215601
Phf21aXP_011237664.1 PHD_PHF21A 506..548 CDD:276998 26/41 (63%)
Blue background indicates that the domain is not in the aligned region.

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