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Protein Alignment Chd3 and LOC1272503

DIOPT Version :10

Sequence 1:	NP_649111.1	Gene:	Chd3 / 40111	FlyBaseID:	FBgn0023395	Length:	892	Species:	Drosophila melanogaster
Sequence 2:	XP_311416.5	Gene:	LOC1272503 / 1272503	VectorBaseID:	AGAMI1_015145	Length:	666	Species:	Anopheles gambiae

Alignment Length:	589	Identity:	192/589 - (32%)
Similarity:	290/589 - (49%)	Gaps:	65/589 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly   229 KKLRSSNKGRQRDRPAPTIDLNK-----KYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPT 288
            :||:|....|:.|     .|.|.     ::.:.|.::...   :..:||.|::||...:...:..
Mosquito    66 RKLKSIENLRKDD-----YDNNNNEDAIEFTETPSYMNAV---MRDYQIAGLNWLISLYNNNLNG 122

  Fly   289 ILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTA 353
            |||||||||||||::..:..|......:||||:.||||||.||..|...:.|        |.|
Mosquito   123 ILADEMGLGKTIQSISMIGYLLNVRKLKGPFLVVVPLSTLPNWLNEFNKFLP--------GAK-- 177

  Fly   354 RAVIRKHEISFE--EVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRS 416
              |:|.|.:..:  |:..|......|   :||.:|||||::.:.......::...::||.||.::
Mosquito   178 --VLRAHMVGPQKTEIFRKLRASKPT---WNVAITSYEFMANNRGSFTSTNFHYAIIDEGHRAKN 237

  Fly   417 NQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEF-----TDVSKE 476
            ..:.|..:|.:.:|...::|||||:.|||.||:.|||.|....||....|.:.|     .| .|.
Mosquito   238 ENTIFAGVLRRCKIQSMVMLTGTPVHNNLHELWALLNLLMPLFFNSADNFDSWFKVEDCVD-PKH 301

  Fly   477 EQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGGRV 541
            ||..||.::|:|.:|||.|.:|...:|||....:.|..:.....:...:|.:..|.:...|..:.
Mosquito   302 EQTIRLKKLLKPLLLRRTKKEVTSDIPPKVHIDIYVPPTEQMCLWTHKVLHREVKLIMGSGETKE 366

  Fly   542 CSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNHRVL 606
            ..:.:.:..:||...||||.|.|....|...:     ..:.:.|.|:.:|.|:|.:.:|...:||
Mosquito   367 MRIASRLPHMRKVIQHPYLIPGAENLNTNLVT-----DEIVQFSSKMIVLDKLLARQRARGSKVL 426

  Fly   607 LFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINL 671
            :|||...:|.:|..:|:...|:|..::|......||:.::.||.|.|..||||||||||||||||
Mosquito   427 IFSQFVTVLYLLMDYLDWREYEYCMLEGHTDIAERQEQMNEFNRPDSTKFVFLLSTRAGGLGINL 491

  Fly   672 ATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVR 736
            ..|||||.:|.|:||..|.||..||||:||::||.::|.:...|::|.:...::.|..|...|:|
Mosquito   492 PAADTVIFYDMDFNPQMDFQAEDRAHRIGQQRKVHVFRLLVRGSIDELLYLHSERKRQLDEAVIR 556

  Fly   737 PGMGGMTTNFSKDELEDILRFGTEDLFKDGKSEAIHYDDKAVADLLDR--------------TNR 787
                 ..|..||..|.....:....|..||.     .|:.||...||.              |:.
Mosquito   557 -----TETKPSKKLLMSAYEYQRTSLMADGL-----IDEAAVDTKLDELFHKMGSLTRITASTDS 611

  Fly   788 GIEE 791
            ||.|
Mosquito   612 GIME 615

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.