Sequence 1: | NP_649111.1 | Gene: | Chd3 / 40111 | FlyBaseID: | FBgn0023395 | Length: | 892 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006237458.1 | Gene: | Chd4 / 117535 | RGDID: | 620064 | Length: | 1956 | Species: | Rattus norvegicus |
Alignment Length: | 966 | Identity: | 512/966 - (53%) |
---|---|---|---|
Similarity: | 659/966 - (68%) | Gaps: | 113/966 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 DPD--------WKTP--------GKASKDKRPKTNAKKQKFRDE-------------EYCKVCSD 43
Fly 44 GGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRCI--PLPGKAEKILSWRW------------ 94
Fly 95 --ALDRSVELRTSKGEKRREYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEP---- 153
Fly 154 ---------SLEELDDQDGNLHERFYRYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDS 209
Fly 210 SWERESDSIPG---LNQAIALYKKLRSSNKG-----------RQRDRP--APTIDLNKKYEDQPV 258
Fly 259 FLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISV 323
Fly 324 PLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTK-----TMRENQTQYKFNV 383
Fly 384 MLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEEL 448
Fly 449 FHLLNFLSSGKFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVE 513
Fly 514 LSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEM 578
Fly 579 SSLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQK 643
Fly 644 AIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIY 708
Fly 709 RFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRFGTEDLFKD-------- 765
Fly 766 ---GK-SEAIHYDDKAVADLLDRTNRGIEEKE-SWANEYLSSFKVASYATKEDH--EEHD---DY 820
Fly 821 NNDAENTDPFYWENLMGKSQPKLPKKQKKQSQQSQVDVESIMGKGKRIRKEIDYSN 876 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Chd3 | NP_649111.1 | PHD2_CHD_II | 37..79 | CDD:277007 | 27/41 (66%) |
CHROMO | 85..147 | CDD:237991 | 26/75 (35%) | ||
CHROMO | 181..233 | CDD:214605 | 19/54 (35%) | ||
SNF2_N | 270..561 | CDD:278600 | 191/295 (65%) | ||
DEXDc | 288..440 | CDD:238005 | 97/156 (62%) | ||
Helicase_C | 585..700 | CDD:278689 | 88/114 (77%) | ||
Chd4 | XP_006237458.1 | CHDNT | 164..216 | CDD:285335 | |
PHD1_CHD_II | 372..414 | CDD:277006 | 5/15 (33%) | ||
PHD2_CHD_II | 451..493 | CDD:277007 | 27/41 (66%) | ||
CHROMO | <540..577 | CDD:237991 | 18/36 (50%) | ||
CHROMO | 622..676 | CDD:214605 | 18/53 (34%) | ||
SNF2_N | 729..1025 | CDD:278600 | 191/295 (65%) | ||
DEXDc | 746..904 | CDD:238005 | 97/157 (62%) | ||
Helicase_C | 1068..1164 | CDD:278689 | 75/95 (79%) | ||
DUF1087 | 1302..1352 | CDD:283996 | 19/57 (33%) | ||
DUF1086 | 1413..1549 | CDD:283992 | |||
CHDCT2 | 1770..1940 | CDD:285336 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 145 | 1.000 | Domainoid score | I4455 |
eggNOG | 1 | 0.900 | - | - | E2759_KOG0383 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D35578at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000546 | |
OrthoInspector | 1 | 1.000 | - | - | otm45407 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101931 | |
Panther | 1 | 1.100 | - | - | O | PTHR45623 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
8 | 7.820 |