DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd3 and Chd4

DIOPT Version :10

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_006237458.1 Gene:Chd4 / 117535 RGDID:620064 Length:1956 Species:Rattus norvegicus


Alignment Length:966 Identity:512/966 - (53%)
Similarity:659/966 - (68%) Gaps:113/966 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DPD--------WKTP--------GKASKDKRPKTNAKKQKFRDE-------------EYCKVCSD 43
            |||        |..|        .:|.:|     |::.::..:|             |:|:||.|
  Rat   398 DPDMEKAPEGKWSCPHCEKEGIQWEAKED-----NSEGEEILEEVGGDPEEEDDHHMEFCRVCKD 457

  Fly    44 GGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRCI--PLPGKAEKILSWRW------------ 94
            ||:|||||:|||.||..||:|||..||.|:|:||||.  .|.||.:|||.|:|            
  Rat   458 GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRP 522

  Fly    95 --ALDRSVELRTSKGEKRREYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEP---- 153
              |...:...:..:|...|::|:||.|||||||.|:.|.|:.||...|..::||::||:||    
  Rat   523 PDADPNTPSPKPLEGRPERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGD 587

  Fly   154 ---------SLEELDDQDGNLHERFYRYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDS 209
                     ..:..|.:...:.||||||||||||:::.|::|||.:..|...||:|||:|.|:.:
  Rat   588 FGGDEEKSRKRKNKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQA 652

  Fly   210 SWERESDSIPG---LNQAIALYKKLRSSNKG-----------RQRDRP--APTIDLNKKYEDQPV 258
            |||.|...|..   ..|:...:::|....:|           |:.:||  .||:|...|||.||.
  Rat   653 SWESEDVEIQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPE 717

  Fly   259 FLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISV 323
            :|...|..|||:|:||::|||:||.||..||||||||||||:||.||||||:||||.:||||:|.
  Rat   718 YLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 782

  Fly   324 PLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTK-----TMRENQTQYKFNV 383
            ||||:.|||||.|:|||::|.|||||.|.:||:||::|.|||:...:     :..:.:...||:|
  Rat   783 PLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHV 847

  Fly   384 MLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEEL 448
            :|||||.|::|.|.||.||||.|:|||||||::|||||||:|:.|.:.:||||||||||||||||
  Rat   848 LLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEEL 912

  Fly   449 FHLLNFLSSGKFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVE 513
            |||||||:..:|::|:.|..||.|::||:|:|:||::|.|||||||||||.|:||.|:|.|||||
  Rat   913 FHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVE 977

  Fly   514 LSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEM 578
            ||.||||:||:|||:||:|||.:|||...||||::|||:||||||||||.||.||...|:|:|:.
  Rat   978 LSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDG 1042

  Fly   579 SSLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQK 643
            |:|.:|||||.||.||||.||...||||:||||||||::||.|||.|||:|:||||.|.|::||:
  Rat  1043 SALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQE 1107

  Fly   644 AIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIY 708
            ||||||.|.::.|.||||||||||||||||||||||:|||||||||:||||||||:||.||||||
  Rat  1108 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIY 1172

  Fly   709 RFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRFGTEDLFKD-------- 765
            ||||..||||||.||||.||||||||||||:|..|.:.||.||:|||:||||:||||        
  Rat  1173 RFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD 1237

  Fly   766 ---GK-SEAIHYDDKAVADLLDRTNRGIEEKE-SWANEYLSSFKVASYATKEDH--EEHD---DY 820
               |: |..|||||||:..||||.....|:.| ...||||||||||.|..:|:.  ||.:   :.
  Rat  1238 NKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREI 1302

  Fly   821 NNDAENTDPFYWENLMGKSQPKLPKKQKKQSQQSQVDVESIMGKGKRIRKEIDYSN 876
            ....|:.||.|||.|:           :...:|.|.|:...:||||||||:::|::
  Rat  1303 IKQEESVDPDYWEKLL-----------RHHYEQQQEDLARNLGKGKRIRKQVNYND 1347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007 27/41 (66%)
CD_CSD 82..146 CDD:475127 27/77 (35%)
CD2_tandem_CHD3-4_like 176..230 CDD:349309 21/56 (38%)
PLN03142 266..>768 CDD:215601 347/518 (67%)
Chd4XP_006237458.1 CHDNT 164..217 CDD:462357
PHD1_CHD_II 372..414 CDD:277006 5/15 (33%)
PHD2_CHD_II 451..493 CDD:277007 27/41 (66%)
CD1_tandem_CHD3-4_like 498..576 CDD:349314 27/77 (35%)
CD2_tandem_CHD3-4_like 619..673 CDD:349309 21/53 (40%)
PLN03142 724..>1281 CDD:215601 367/556 (66%)
DEXHc_CHD4 726..957 CDD:350814 144/230 (63%)
DUF1087 1302..1345 CDD:461922 18/53 (34%)
CHDII_SANT-like 1409..1549 CDD:461920
CHDCT2 1770..1915 CDD:462358
Blue background indicates that the domain is not in the aligned region.

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