DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd3 and Chd4

DIOPT Version :9

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_006237458.1 Gene:Chd4 / 117535 RGDID:620064 Length:1956 Species:Rattus norvegicus


Alignment Length:966 Identity:512/966 - (53%)
Similarity:659/966 - (68%) Gaps:113/966 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DPD--------WKTP--------GKASKDKRPKTNAKKQKFRDE-------------EYCKVCSD 43
            |||        |..|        .:|.:|     |::.::..:|             |:|:||.|
  Rat   398 DPDMEKAPEGKWSCPHCEKEGIQWEAKED-----NSEGEEILEEVGGDPEEEDDHHMEFCRVCKD 457

  Fly    44 GGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRCI--PLPGKAEKILSWRW------------ 94
            ||:|||||:|||.||..||:|||..||.|:|:||||.  .|.||.:|||.|:|            
  Rat   458 GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRP 522

  Fly    95 --ALDRSVELRTSKGEKRREYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEP---- 153
              |...:...:..:|...|::|:||.|||||||.|:.|.|:.||...|..::||::||:||    
  Rat   523 PDADPNTPSPKPLEGRPERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGD 587

  Fly   154 ---------SLEELDDQDGNLHERFYRYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDS 209
                     ..:..|.:...:.||||||||||||:::.|::|||.:..|...||:|||:|.|:.:
  Rat   588 FGGDEEKSRKRKNKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQA 652

  Fly   210 SWERESDSIPG---LNQAIALYKKLRSSNKG-----------RQRDRP--APTIDLNKKYEDQPV 258
            |||.|...|..   ..|:...:::|....:|           |:.:||  .||:|...|||.||.
  Rat   653 SWESEDVEIQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPE 717

  Fly   259 FLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISV 323
            :|...|..|||:|:||::|||:||.||..||||||||||||:||.||||||:||||.:||||:|.
  Rat   718 YLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 782

  Fly   324 PLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTK-----TMRENQTQYKFNV 383
            ||||:.|||||.|:|||::|.|||||.|.:||:||::|.|||:...:     :..:.:...||:|
  Rat   783 PLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHV 847

  Fly   384 MLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEEL 448
            :|||||.|::|.|.||.||||.|:|||||||::|||||||:|:.|.:.:||||||||||||||||
  Rat   848 LLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEEL 912

  Fly   449 FHLLNFLSSGKFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVE 513
            |||||||:..:|::|:.|..||.|::||:|:|:||::|.|||||||||||.|:||.|:|.|||||
  Rat   913 FHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVE 977

  Fly   514 LSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEM 578
            ||.||||:||:|||:||:|||.:|||...||||::|||:||||||||||.||.||...|:|:|:.
  Rat   978 LSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDG 1042

  Fly   579 SSLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQK 643
            |:|.:|||||.||.||||.||...||||:||||||||::||.|||.|||:|:||||.|.|::||:
  Rat  1043 SALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQE 1107

  Fly   644 AIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIY 708
            ||||||.|.::.|.||||||||||||||||||||||:|||||||||:||||||||:||.||||||
  Rat  1108 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIY 1172

  Fly   709 RFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRFGTEDLFKD-------- 765
            ||||..||||||.||||.||||||||||||:|..|.:.||.||:|||:||||:||||        
  Rat  1173 RFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD 1237

  Fly   766 ---GK-SEAIHYDDKAVADLLDRTNRGIEEKE-SWANEYLSSFKVASYATKEDH--EEHD---DY 820
               |: |..|||||||:..||||.....|:.| ...||||||||||.|..:|:.  ||.:   :.
  Rat  1238 NKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREI 1302

  Fly   821 NNDAENTDPFYWENLMGKSQPKLPKKQKKQSQQSQVDVESIMGKGKRIRKEIDYSN 876
            ....|:.||.|||.|:           :...:|.|.|:...:||||||||:::|::
  Rat  1303 IKQEESVDPDYWEKLL-----------RHHYEQQQEDLARNLGKGKRIRKQVNYND 1347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007 27/41 (66%)
CHROMO 85..147 CDD:237991 26/75 (35%)
CHROMO 181..233 CDD:214605 19/54 (35%)
SNF2_N 270..561 CDD:278600 191/295 (65%)
DEXDc 288..440 CDD:238005 97/156 (62%)
Helicase_C 585..700 CDD:278689 88/114 (77%)
Chd4XP_006237458.1 CHDNT 164..216 CDD:285335
PHD1_CHD_II 372..414 CDD:277006 5/15 (33%)
PHD2_CHD_II 451..493 CDD:277007 27/41 (66%)
CHROMO <540..577 CDD:237991 18/36 (50%)
CHROMO 622..676 CDD:214605 18/53 (34%)
SNF2_N 729..1025 CDD:278600 191/295 (65%)
DEXDc 746..904 CDD:238005 97/157 (62%)
Helicase_C 1068..1164 CDD:278689 75/95 (79%)
DUF1087 1302..1352 CDD:283996 19/57 (33%)
DUF1086 1413..1549 CDD:283992
CHDCT2 1770..1940 CDD:285336
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 145 1.000 Domainoid score I4455
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35578at33208
OrthoFinder 1 1.000 - - FOG0000546
OrthoInspector 1 1.000 - - otm45407
orthoMCL 1 0.900 - - OOG6_101931
Panther 1 1.100 - - O PTHR45623
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.820

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