DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd3 and chd5

DIOPT Version :9

Sequence 1:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster
Sequence 2:XP_031761592.1 Gene:chd5 / 100487004 XenbaseID:XB-GENE-955461 Length:1953 Species:Xenopus tropicalis


Alignment Length:950 Identity:509/950 - (53%)
Similarity:651/950 - (68%) Gaps:101/950 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WKTPGKASKDKRPKTNAKKQKFRDE-EYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDW 74
            |: |.:..:|:......::::..|. |:|:||.|||:|||||:|||.||..||:|||..||.|:|
 Frog   386 WE-PKEDDEDEEDGAEEEEEEEDDHMEFCRVCKDGGELLCCDTCPSSYHLHCLNPPLPEIPNGEW 449

  Fly    75 ICPRCI--PLPGKAEKILSWRWA-----------LD------RSVELRTSKGEKRREYFIKWHGM 120
            :||||.  ||.||.::||.|.|.           :|      :.||     |...||:|:||.|:
 Frog   450 LCPRCTCPPLKGKVQRILHWVWREPPPPSGFPVDIDPLMPPPKPVE-----GIPEREFFVKWAGL 509

  Fly   121 SYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPSLEEL--DDQDG-------------NLHERFY 170
            |||||.|..|.|:.|:|..|..::||::||::|...:.  .|::|             .:.|:||
 Frog   510 SYWHCSWAKELQLELYHTVMFRNYQRKNDMDDPPPYDYGSGDEEGKSEKRRNKDPLYAKMEEKFY 574

  Fly   171 RYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDSSWERESDSIPGLNQAIALY------- 228
            ||||||||:::.|::|||.:..|...||:||::|.|:..:||.:...||........|       
 Frog   575 RYGIKPEWMMIHRIMNHSFDKKGDVHYLIKWKDLPYDQCTWEIDIIDIPDYENMKQAYWDHRELM 639

  Fly   229 -----KKLRSSN---KGRQRDRP--APTIDLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWG 283
                 :.||..|   |..:.::|  ||.:|...|::.||.::...|..|||:|:||::|||:||.
 Frog   640 LGEDARPLRFKNKKTKDEKLEKPPLAPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWA 704

  Fly   284 QGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYV 348
            ||..||||||||||||:||:||||||:||||.:||:|:|.||||:.|||||.|:||||.|.|||.
 Frog   705 QGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPEFYVVTYT 769

  Fly   349 GGKTARAVIRKHEISFEEVTTKTMR-----ENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVV 408
            |.|.:|||||::|.|||:...|:.:     :.:.|.||:|:|||||.|::|.|.||.|:||.|||
 Frog   770 GDKDSRAVIRENEFSFEDNAIKSGKKVFRMKKEAQIKFHVLLTSYELITIDHAILGSIEWACLVV 834

  Fly   409 DEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDV 473
            ||||||::|||||||:|:.|:|.||||||||||||||||||||||||:..:||:|..|..||.|:
 Frog   835 DEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLDGFLEEFADI 899

  Fly   474 SKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGG 538
            |||:|:|:||::|.|||||||||||.|:||.|:|.|||||||.||||:||.|||:||:|||.|||
 Frog   900 SKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGG 964

  Fly   539 GRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNH 603
            |...|||||||||:||||||||||.||.||.:.|:|.|:.:||.|:||||.||.||||:||...|
 Frog   965 GNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKMLKKLKDGGH 1029

  Fly   604 RVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLG 668
            |||:||||||||::||.|||.|||:|:||||.|.|.|||:||||||.|.::.|.|||||||||||
 Frog  1030 RVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLG 1094

  Fly   669 INLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHL 733
            |||||||||||:|||||||||:||||||||:||.||||||||||..||||||.||||.|||||||
 Frog  1095 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHL 1159

  Fly   734 VVRPGMGGMTTNFSKDELEDILRFGTEDLFKDG-----------------------KSEAIHYDD 775
            |||||:|..:.:.:|.||:|||:||||:||||.                       .|..|||||
 Frog  1160 VVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEADHNCGTVTIYKKTGDNKDVEDSSVIHYDD 1224

  Fly   776 KAVADLLDRTNRGIEEKE-SWANEYLSSFKVASYATKED---HEEHDDYNNDAENTDPFYWENLM 836
            .|::.||||.....|:.| ...||||||||||.|..:|:   .|...:.....||.||.|||.|:
 Frog  1225 AAISKLLDRNQDATEDTEIQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLL 1289

  Fly   837 GKSQPKLPKKQKKQSQQSQVDVESIMGKGKRIRKEIDYSN 876
                       :...:|.|.|:...:||||||||:::|::
 Frog  1290 -----------RHHYEQQQEDLARNLGKGKRIRKQVNYND 1318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007 27/41 (66%)
CHROMO 85..147 CDD:237991 27/78 (35%)
CHROMO 181..233 CDD:214605 17/63 (27%)
SNF2_N 270..561 CDD:278600 200/295 (68%)
DEXDc 288..440 CDD:238005 101/156 (65%)
Helicase_C 585..700 CDD:278689 89/114 (78%)
chd5XP_031761592.1 CHDNT 142..192 CDD:400425
PHD1_CHD_II 337..379 CDD:277006
PHD2_CHD_II 412..454 CDD:277007 27/41 (66%)
CD1_tandem_CHD3-4_like 459..535 CDD:349314 28/80 (35%)
CD2_tandem_CHD3-4_like 580..634 CDD:349309 19/53 (36%)
PLN03142 686..>1189 CDD:215601 350/502 (70%)
DEXHc_CHD5 688..919 CDD:350815 150/230 (65%)
DUF1087 1263..1316 CDD:399459 20/63 (32%)
DUF1086 1351..1492 CDD:368921
MDN1 <1530..1664 CDD:227596
CHDCT2 1697..1823 CDD:400426
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 144 1.000 Domainoid score I4565
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35578at33208
OrthoFinder 1 1.000 - - FOG0000546
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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