Sequence 1: | NP_649111.1 | Gene: | Chd3 / 40111 | FlyBaseID: | FBgn0023395 | Length: | 892 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031761592.1 | Gene: | chd5 / 100487004 | XenbaseID: | XB-GENE-955461 | Length: | 1953 | Species: | Xenopus tropicalis |
Alignment Length: | 950 | Identity: | 509/950 - (53%) |
---|---|---|---|
Similarity: | 651/950 - (68%) | Gaps: | 101/950 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 11 WKTPGKASKDKRPKTNAKKQKFRDE-EYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDW 74
Fly 75 ICPRCI--PLPGKAEKILSWRWA-----------LD------RSVELRTSKGEKRREYFIKWHGM 120
Fly 121 SYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPSLEEL--DDQDG-------------NLHERFY 170
Fly 171 RYGIKPEWLLVQRVINHSEEPNGGTMYLVKWRELSYNDSSWERESDSIPGLNQAIALY------- 228
Fly 229 -----KKLRSSN---KGRQRDRP--APTIDLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWG 283
Fly 284 QGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYV 348
Fly 349 GGKTARAVIRKHEISFEEVTTKTMR-----ENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVV 408
Fly 409 DEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDV 473
Fly 474 SKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGG 538
Fly 539 GRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNH 603
Fly 604 RVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLG 668
Fly 669 INLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHL 733
Fly 734 VVRPGMGGMTTNFSKDELEDILRFGTEDLFKDG-----------------------KSEAIHYDD 775
Fly 776 KAVADLLDRTNRGIEEKE-SWANEYLSSFKVASYATKED---HEEHDDYNNDAENTDPFYWENLM 836
Fly 837 GKSQPKLPKKQKKQSQQSQVDVESIMGKGKRIRKEIDYSN 876 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Chd3 | NP_649111.1 | PHD2_CHD_II | 37..79 | CDD:277007 | 27/41 (66%) |
CHROMO | 85..147 | CDD:237991 | 27/78 (35%) | ||
CHROMO | 181..233 | CDD:214605 | 17/63 (27%) | ||
SNF2_N | 270..561 | CDD:278600 | 200/295 (68%) | ||
DEXDc | 288..440 | CDD:238005 | 101/156 (65%) | ||
Helicase_C | 585..700 | CDD:278689 | 89/114 (78%) | ||
chd5 | XP_031761592.1 | CHDNT | 142..192 | CDD:400425 | |
PHD1_CHD_II | 337..379 | CDD:277006 | |||
PHD2_CHD_II | 412..454 | CDD:277007 | 27/41 (66%) | ||
CD1_tandem_CHD3-4_like | 459..535 | CDD:349314 | 28/80 (35%) | ||
CD2_tandem_CHD3-4_like | 580..634 | CDD:349309 | 19/53 (36%) | ||
PLN03142 | 686..>1189 | CDD:215601 | 350/502 (70%) | ||
DEXHc_CHD5 | 688..919 | CDD:350815 | 150/230 (65%) | ||
DUF1087 | 1263..1316 | CDD:399459 | 20/63 (32%) | ||
DUF1086 | 1351..1492 | CDD:368921 | |||
MDN1 | <1530..1664 | CDD:227596 | |||
CHDCT2 | 1697..1823 | CDD:400426 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 144 | 1.000 | Domainoid score | I4565 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D35578at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000546 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 3.010 |