DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rept and ruvbl1

DIOPT Version :9

Sequence 1:NP_001262040.1 Gene:rept / 40092 FlyBaseID:FBgn0040075 Length:481 Species:Drosophila melanogaster
Sequence 2:XP_002933113.1 Gene:ruvbl1 / 733772 XenbaseID:XB-GENE-486361 Length:456 Species:Xenopus tropicalis


Alignment Length:453 Identity:206/453 - (45%)
Similarity:299/453 - (66%) Gaps:15/453 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 EVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARRAAGVVVQMVREGKIAGRCILLA 72
            ||:..|:.:||..|||::|||||:...|:..:.|:|||::||.|.||:|::::..|:|||.:|||
 Frog     5 EVKSTTKTQRIATHSHVKGLGLDENGMAKQAAAGLVGQENAREACGVIVELIKSKKMAGRAVLLA 69

  Fly    73 GEPSTGKTAIAVGMAQALGTETPFTSMSGSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGE 137
            |.|.|||||:|:.:||.||.:.||..|.|||:||.|:.|||.|.:..|::||:||:|..|:.|||
 Frog    70 GPPGTGKTALALAIAQELGNKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGE 134

  Fly   138 VVEI---QIERPASGTGQKVGKVT--LKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGK 197
            |.|:   :.|.|..|.|:.:..|.  |||.:......|...|.|...||:::.||||.|:..||.
 Frog   135 VTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIYESLQKERVEVGDVIYIEANSGA 199

  Fly   198 VNKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHG---FLA---- 255
            |.:.||..|.|.::|....:  :|..|:|::.|:|||:..||||::||.|:|..|   .|:    
 Frog   200 VKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKKKEVIQDVTLHDLDVANARPQGGQDILSMMGQ 262

  Fly   256 LFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHMLDIECFSFLNRALESDMAPVV 320
            |......||..::|.:||..|.::.::|.||:.|||||||||||||||||::|:|||||.:||:|
 Frog   263 LMKPKKTEITDKLRAEINKVVNKYIDQGIAELVPGVLFIDEVHMLDIECFTYLHRALESSLAPIV 327

  Fly   321 VMATNRGITRIRGT-NYRSPHGIPIDLLDRMIIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALT 384
            :.|||||...|||| :..||||||:|||||::||||:.|:.:|:|:|:|||.:.|...:..:||.
 Frog   328 IFATNRGNCIIRGTEDVASPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALN 392

  Fly   385 ILTRIATDTSLRYAIQLITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYM 447
            .|..|.|.|:|||::||:|.|||:.:......:..|.|:::..||.|...|:|||.|.|:.:|
 Frog   393 HLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEINELFYDAKSSAKILAEQQEKFM 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
reptNP_001262040.1 TIP49 17..408 CDD:283678 190/403 (47%)
P-loop_NTPase 69..>113 CDD:304359 25/43 (58%)
AAA <267..358 CDD:99707 57/91 (63%)
ruvbl1XP_002933113.1 TIP49 2..455 CDD:224145 205/451 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D273414at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.