DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rept and ruvb-1

DIOPT Version :9

Sequence 1:NP_001262040.1 Gene:rept / 40092 FlyBaseID:FBgn0040075 Length:481 Species:Drosophila melanogaster
Sequence 2:NP_505567.2 Gene:ruvb-1 / 179388 WormBaseID:WBGene00007784 Length:476 Species:Caenorhabditis elegans


Alignment Length:445 Identity:186/445 - (41%)
Similarity:277/445 - (62%) Gaps:23/445 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RIERIGAHSHIRGLGLD-DVLEARLVSQGMVGQKDARRAAGVVVQMVREGKIAGRCILLAGEPST 77
            :|:||.||||::|||:| :..||...:.|.|||..||.||.:||.|:|...:|||.:|:||.|:|
 Worm    29 QIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVVDMIRLKCMAGRAVLIAGPPAT 93

  Fly    78 GKTAIAVGMAQALGTETPFTSMSGSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQ 142
            ||||||:.|:|.||...||..:..||::|.|:.|||.|.::.|::||:|:||..::.||||.|:.
 Worm    94 GKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMRSFRRAIGLRVKETKDVYEGEVTELS 158

  Fly   143 IERPA--SGTGQKVGK--VTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNKLGR 203
            ....:  ||.|:.:..  ::|||.:......|...|.:..:|::::.||||.|:..||.|.::||
 Worm   159 PVEASDNSGMGKTISHLVLSLKTAKGSKQLKLDPSIYDSILKQRVEVGDVIYIEANSGIVKRVGR 223

  Fly   204 SFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHGFLALFSGDTG------ 262
            ....|.::|....:  ||..|:|:::|.|::|..|:||::|:.|:|..|    ..||..      
 Worm   224 CDVYASEFDLEADE--FVPMPKGDVRKSKDIVQNVSLHDLDIANARPQG----RQGDVSNIVSQL 282

  Fly   263 ------EIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHMLDIECFSFLNRALESDMAPVVV 321
                  |:...:|.:||..|.|:.|.|.||:.|||||||||||||:|||::|.|||||.||||||
 Worm   283 MTPKKTEVTDRLRSEINKVVNEYIESGVAELMPGVLFIDEVHMLDVECFTYLYRALESPMAPVVV 347

  Fly   322 MATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTIL 386
            .|||||.|.:||...::|||||.::|||::||.|:.|:|:::::||..|.|.|:......|..:|
 Worm   348 FATNRGTTTVRGLGDKAPHGIPPEMLDRLMIIPTMKYNEEDIRKILVHRTEAENVQFEEKAFDLL 412

  Fly   387 TRIATDTSLRYAIQLITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKE 441
            :::..:.|||||:|||..|.|..:......:..|||.:...||:|...|.|..:|
 Worm   413 SKVGAEKSLRYALQLIAPARLCAQTCGREVIEVEDVDRCTKLFMDRGESLKKAEE 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
reptNP_001262040.1 TIP49 17..408 CDD:283678 175/407 (43%)
P-loop_NTPase 69..>113 CDD:304359 22/43 (51%)
AAA <267..358 CDD:99707 56/90 (62%)
ruvb-1NP_505567.2 TIP49 32..433 CDD:283678 175/406 (43%)
P-loop_NTPase 85..>138 CDD:304359 26/52 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1224
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D273414at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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