DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem2 and SMAD4

DIOPT Version :9

Sequence 1:NP_001262034.1 Gene:Gem2 / 40087 FlyBaseID:FBgn0036850 Length:245 Species:Drosophila melanogaster
Sequence 2:NP_005350.1 Gene:SMAD4 / 4089 HGNCID:6770 Length:552 Species:Homo sapiens


Alignment Length:35 Identity:9/35 - (25%)
Similarity:11/35 - (31%) Gaps:10/35 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PEDQTFQLQALEICEPDSSFDPQKPPESGEEYLMH 39
            |..|...||          ..|..||..|..:.:|
Human   281 PHHQNGHLQ----------HHPPMPPHPGHYWPVH 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem2NP_001262034.1 SIP1 18..239 CDD:282754 5/22 (23%)
SMAD4NP_005350.1 Mediates interaction with ZBTB7A. /evidence=ECO:0000269|PubMed:25514493 1..322 9/35 (26%)
MH1_SMAD_4 14..138 CDD:199816
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 168..194
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..256
SAD 275..320 9/35 (26%)
MH2_SMAD_4 320..541 CDD:199823
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3221
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.950

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