DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-2 and AT1G43245

DIOPT Version :10

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_001322450.1 Gene:AT1G43245 / 840925 AraportID:AT1G43245 Length:573 Species:Arabidopsis thaliana


Alignment Length:551 Identity:104/551 - (18%)
Similarity:178/551 - (32%) Gaps:178/551 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 LRATRDIKIGEQILKEAPLVLGPKVAS------APLCLGCHRNLLAPGKPRGNYHKCS-SCS--- 115
            :||..||:|...:...    |.|..:|      :..|..|. :||.|..|:..|  || :||   
plant     3 IRAAEDIEIRTDLFPP----LSPLASSLYDSFLSSHCSSCF-SLLPPSPPQPLY--CSAACSLTD 60

  Fly   116 ------------WPLCGKECEDSVHHKAECQLMSGSNFQSKINYVPGEEERKESAYCVIMLLRCM 168
                        .|:...:...|:|      |::.:           ..:...|.:.:..||...
plant    61 SFTNSPQFPPEITPILPSDIRTSLH------LLNST-----------AVDTSSSPHRLNNLLTNH 108

  Fly   169 HLKDKDPDAFLKLYNLEDHLKERLETPLYQVLRANLITFIKTVL-GMKDWPEMDILRIAAILDTN 232
            ||...||...:.:::                 .||   ||.||: ..:...|::...|.|:| ||
plant   109 HLLMADPSISVAIHH-----------------AAN---FIATVIRSNRKNTELEEAAICAVL-TN 152

  Fly   233 TFEVRQPRERRKIRALYPGA-AMISHDCVPNMRHRFDDDM------------------------- 271
            ..||..........|||..: :.|:|.|.||..:||.::.                         
plant   153 AVEVHDSNGLALGIALYNSSFSWINHSCSPNSCYRFVNNRTSYHDVHVTNTETSSNLELQEQVCG 217

  Fly   272 -----------NIVFLAKRKIAKGEILSISYTQPLRSTIQRRVHLRQAKCFDCSCARC--QDPEE 323
                       .::..:.::|..||.:::||...|:.|..|:..|.....|.|:|.||  ..|..
plant   218 TSLNSGNGNGPKLIVRSIKRIKSGEEITVSYIDLLQPTGLRQSDLWSKYRFMCNCGRCAASPPAY 282

  Fly   324 LGSFAGAQTCLKCKAGKIISLNPLLNSAPWKCQLCNFKRSAKDVVTSDAELQQELESLDKTTPVA 388
            :.|.......|:.:...:...:...|......::.::.:.|.|...||        ::|..|...
plant   283 VDSILEGVLTLESEKTTVGHFDGSTNKDEAVGKMNDYIQEAIDDFLSD--------NIDPKTCCE 339

  Fly   389 LEEFIYRHRADLHE-TNTHILQAK----YALTQLYGSAPGFAMEELSGES-----LNRKLQLCEE 443
            :.|.:..|.....| :..|.|:..    .||......|..:.:..:..|:     ::|       
plant   340 MIESVLHHGIQFKEDSQPHCLRLHACHYVALNAYITLATAYRIRSIDSETGIVCDMSR------- 397

  Fly   444 LLKLADIFDGGWSIF-------------------------RGNLLIDMEEALV-----------T 472
                   ....:|:|                         .|.||.|:...|:           |
plant   398 -------ISAAYSLFLAGVSHHLFCAERSFAISAAKFWKNAGELLFDLAPKLLMELSVESDVKCT 455

  Fly   473 QAL---RSKDPLDCEEKLRNAAEMLREIRNI 500
            :.|   .|....|.:||.|.....:|:|..:
plant   456 KCLMLETSNSHRDIKEKSRQILSCVRDISQV 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997 28/127 (22%)
AT1G43245NP_001322450.1 SET_SMYD <141..275 CDD:380997 29/134 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.