DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-2 and SDG38

DIOPT Version :10

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_196280.2 Gene:SDG38 / 830550 AraportID:AT5G06620 Length:325 Species:Arabidopsis thaliana


Alignment Length:280 Identity:59/280 - (21%)
Similarity:88/280 - (31%) Gaps:90/280 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   433 VIVANNLINMYSKCKC-IDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQP 496
            |:..|..:.:....|| ::|||: .|..|...|....|.:||    .:.|..|...:..:..|..
plant    42 VLKPNGDVRLCGDYKCTVNKALN-QHPYPVPAVNQLLSTLAG----GKVFAKLDLAQAYQQLLVD 101

  Fly   497 NA-------ITLTAALAACARIGALMCG----KEIHAHVLRTGV----GLDDFLPNALL---DMY 543
            .|       ||...|.    |:..|..|    ..|..|.:.|.:    |:..:..:.||   ...
plant   102 EASADAQTIITHRGAF----RVKRLQFGISTAPGIFQHFMETLLSSIPGVVPYFDDVLLMGPSES 162

  Fly   544 VRCGRMNTAWSQFNSQ----KKD-----VTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEI 599
            :...|:....|:|:|.    ||:     .||.|.|  ||              |:..|.:.|.| 
plant   163 ILADRLREVLSRFDSSGIRLKKEKCEIGATSVNFL--GY--------------RIDASGIHPTE- 210

  Fly   600 TFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664
                                  ||::.....|..|   |..:|....|.|...|.|:.......:
plant   211 ----------------------SKVKAIHDAPEPK---CKQELQAFLGLLNFYHSFLAHKATVAE 250

  Fly   665 PAVWGALLNACRIHHKIDLG 684
            |           :|...|.|
plant   251 P-----------LHRLFDKG 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997
SDG38NP_196280.2 SET 43..>75 CDD:394802 9/32 (28%)
SET_SMYD <242..321 CDD:380997 4/29 (14%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.