DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-2 and AT4G02220

DIOPT Version :10

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_567225.1 Gene:AT4G02220 / 828106 AraportID:AT4G02220 Length:418 Species:Arabidopsis thaliana


Alignment Length:263 Identity:48/263 - (18%)
Similarity:84/263 - (31%) Gaps:123/263 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 CALCQA-KASQLCAACRNVVYCSREHQKEHWKKGHRSECQCF----------------------- 49
            |..|.. |..:||:.|:|..|||.:||..||:.||::|||..                       
plant   188 CTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQLRTVSETSDSGPVNNGVAPTEKQK 252

  Fly    50 ----------------------EIATNEVLGRHLRATRDI------------------------- 67
                                  |::.::.:.:.|.:.|::                         
plant   253 VASKSLWKEFVLINEDESEYDTEMSGDDEVAKPLVSKREVDDQMKSLMNDFEGDADKKNWVNFQQ 317

  Fly    68 ---KIGEQILKEA---------PLVLGPKVASAPLCLGCHRNLLAPGKPRGNYHKCSSCSWPLCG 120
               |..||:|:.:         |:..| :|:.:.|                  ..|.||..|.| 
plant   318 RVDKAPEQVLRYSRSSGAKPLWPIASG-RVSKSEL------------------PSCKSCGGPRC- 362

  Fly   121 KECEDSVHHKAECQLMSGSNFQSKINYVPGEEERKESAYCVIMLLRCMH-----LKDKDPDAFLK 180
                      .|.|:|....|     :..|:.||:...:..|::..|.:     |..|:...:::
plant   363 ----------FEFQVMPQLLF-----FFGGKNERESLDWATIVVYTCENSCDSSLSYKEEFVWVQ 412

  Fly   181 LYN 183
            ||:
plant   413 LYS 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312 16/37 (43%)
SET_SMYD <227..318 CDD:380997
AT4G02220NP_567225.1 zf-MYND 188..226 CDD:460312 16/37 (43%)
PDCD2_C 312..412 CDD:461221 24/134 (18%)
Blue background indicates that the domain is not in the aligned region.

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