DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-2 and smyd4

DIOPT Version :9

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_001070062.1 Gene:smyd4 / 767654 ZFINID:ZDB-GENE-060929-248 Length:753 Species:Danio rerio


Alignment Length:595 Identity:116/595 - (19%)
Similarity:191/595 - (32%) Gaps:205/595 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 CALCQAKASQL--CAACRNVVYCSREHQKEHWKKGHRSECQC-FEIATNEVLGRHLRATRDIKIG 70
            |..|.:::...  |..|....||....||:.|.:.|:.||.. .::....||| ||.....:|.|
Zfish   246 CHHCLSQSLSFVPCPKCSYARYCGESCQKDAWDQWHQWECPVGADLLAIGVLG-HLALRVVLKAG 309

  Fly    71 EQILKEAPLVLGPKVASAPLCLGCHRNLLAPGKPRGNYHKCSSCSWPLCGKECEDSVHHKAECQL 135
                 :..:.:|.|..                |.....:|..|......|.:|..|:.|      
Zfish   310 -----QTEVQMGIKNT----------------KDHVTTYKNDSPVQLSLGGDCGKSLDH------ 347

  Fly   136 MSGSNFQSKINYVPGEEERKESAYCVIMLLRCMHLKDKDPDAFLKLYNLEDHLKERLETPLYQVL 200
                                         ..|.|     ..:::.:|:|..|:.:  .:|..:.|
Zfish   348 -----------------------------TDCFH-----GSSYMGIYSLLPHVAQ--HSPASRFL 376

  Fly   201 RANLITFIKTVL---------------GMK-DW-PEMDILRIAA------------------ILD 230
            .|..:..|...|               |:| .| |||.:|...|                  :.:
Zfish   377 MAITMAVIYGKLQGGPPPNKWMSFKDEGVKASWQPEMSMLGATALRHMMQLRCNAQAITAVRVKE 441

  Fly   231 TNTFEVRQPRERRKIRALYPGAAMISHDCVPN-------------------MRHRFD------DD 270
            .:...|:...|.|...|::|..::::|.|.||                   ....||      ..
Zfish   442 ESGMAVQSSSEIRIATAIFPVLSLLNHSCSPNTSISFTTGFQPDPHNQLGCSEGHFDHPKGSRSG 506

  Fly   271 MNIVFLAKRKIAKGEILSISYTQPLRSTI---QRRVHLRQAKCFDCSCARCQ------DPEELGS 326
            :.:...|.:.:..|:.:...| .|.||.:   :|:..|.:...|.|.|..||      .|.....
Zfish   507 VTVTVRASKDLTAGQEILHCY-GPHRSRMEVKERQRLLLEQYFFQCVCQACQRDLSEGSPNAKEH 570

  Fly   327 FAGAQTCLKCKAGKIISLNPLLNSAPWKCQLCNFKRSAKDVVTSDAELQQELESLDKTTPVALEE 391
            .|....|:||  ||.:..:....:..|..  |..:.|:.||       |..|:...    :.|:|
Zfish   571 TAPGMKCVKC--GKPLQSHTDGYTCSWSS--CGHQISSADV-------QNRLQGFQ----LLLDE 620

  Fly   392 FIYRHRADLHETNTHILQAKY-------------------ALTQLYGSAPGFAMEELSGESLNRK 437
            .::....|......||||:.:                   ||.:||.|...::   |:...|.|.
Zfish   621 AVHLMEQDRLNEALHILQSAFSQANSILTETHPFQGELADALARLYASTGEWS---LAASHLKRS 682

  Fly   438 L------------QLCEELLKLADIF----DGGWSIFRGNLLIDMEEALVTQALRSKDPLDCE-- 484
            |            :|..:|.|||.:.    ||..|:           :::.:|.|... |.|.  
Zfish   683 LVAIQAQFGEDSIELGRQLFKLAQLHFNGRDGVASL-----------SVIPRARRLLS-LHCSPR 735

  Fly   485 -EKLRNAAEM 493
             |:|:..:||
Zfish   736 CEELQELSEM 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:280009 10/38 (26%)
SET <246..291 CDD:214614 10/69 (14%)
smyd4NP_001070062.1 TPR_11 68..134 CDD:290150
TPR repeat 68..96 CDD:276809
TPR repeat 101..134 CDD:276809
zf-MYND 246..285 CDD:280009 10/38 (26%)
SET <456..532 CDD:214614 12/76 (16%)
T6SS_VasJ <603..679 CDD:299836 18/89 (20%)
TPR_12 615..683 CDD:290160 15/74 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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