DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-2 and SmydA-3

DIOPT Version :10

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_609464.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster


Alignment Length:476 Identity:129/476 - (27%)
Similarity:223/476 - (46%) Gaps:36/476 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 VLGRHLRATRDIKIGEQILKEAPLVLGPKVASAPLCLGCHRNLLAPGKPRGNYHKCSSCSWPLCG 120
            |.||:|.|...|:....:::|.|..:|||.....:||||:.     ..|......||.|.|||| 
  Fly    19 VCGRYLVAKGAIRGHGLLIEELPFAVGPKCNGPVVCLGCYE-----PNPDPEEELCSECGWPLC- 77

  Fly   121 KEC---EDSVHHKAECQLMSGSNFQSKINYVPGEEERKESAYCVIMLLRCMHLKDKDPDAF-LKL 181
            .||   .|:.|.:.||..:..:  :::...:|..........| ||.||.:..|:.:|:.: .::
  Fly    78 VECAQQADNAHFRLECSQLKDA--RARFFRLPSGSRHCPQLDC-IMPLRVLLAKEANPERWDNEV 139

  Fly   182 YNLEDHLKER-LETPLYQVLRANLITFIKTVLGMKD-WPEMDILRIAAILDTNTFEVRQPRERRK 244
            ..:|.|.:|| .:..::...|.|:..:::....:.: :.|..|:::..:|:.|.||.|.|: ...
  Fly   140 APMEHHKEERQRDADVWHADRVNIAQYLRGPCQLANRFSEELIMQVVGVLEVNAFEARSPK-GYP 203

  Fly   245 IRALYPGAAMISHDCVPNMRHRF--DDDMNIVFLAKRKIAKGEILSISYTQPLRSTIQRRVHLRQ 307
            :|.|:|...:::|:||||.....  .:...|...|...:.:|:.|..|||..|..|.||:.||:|
  Fly   204 LRCLFPYTGILAHNCVPNTSRSIYPSEGYKIRLRAMVDLEEGQPLHHSYTYTLDGTAQRQKHLKQ 268

  Fly   308 AKCFDCSCARCQDPEELGSFAGAQTCLKCKAGKIISLNPLLNSAPWKCQLCNFKRSAKDVVTSDA 372
            .|.|.|.|.||.||.|||:...:..|.:|..|..:...|......|.|..|....|..|.:....
  Fly   269 GKFFTCQCERCLDPTELGTHFSSLKCGQCAEGFQVPRQPTEPDTSWNCANCGSDTSNADALAMLQ 333

  Fly   373 ELQQELESLDKTTPVA------LEEFIYRHRADLHETNTHILQAKYALTQLYGSAPGFAMEELSG 431
            .||.|:.:: :..|:|      :|..:.::::.||..:......:..|.::||...|:.|.:|..
  Fly   334 SLQSEVNAV-QALPMAAKRLEEIERLLRKYKSLLHPLHFIATGLRQLLIEMYGRVQGYEMVQLPD 397

  Fly   432 ESLNRKLQLCEELLKLADIFDGGWSIFRGNLLIDMEEALVTQALRSKDPL--------DCEEKLR 488
            ..|.||.:||.::|::.:.|:.|.|..|...|.::...||   |.:|...        :...:|.
  Fly   398 HQLERKAELCRQVLRVLNTFEPGLSRTRAMNLYELHVPLV---LLAKSGFIAGKLKGGELRARLV 459

  Fly   489 NAAEMLREIRNIMKHEPEMQQ 509
            :|.::|:|...|::.|.:..|
  Fly   460 DAIDLLKECVEILEFEDKSSQ 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997 32/92 (35%)
SmydA-3NP_609464.1 SET_SMYD <192..279 CDD:380997 31/87 (36%)
Blue background indicates that the domain is not in the aligned region.

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