DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-2 and SmydA-4

DIOPT Version :9

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster


Alignment Length:499 Identity:148/499 - (29%)
Similarity:253/499 - (50%) Gaps:34/499 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 SREHQKEHWKKGHRSECQ----CFEIATNEVLGRHLRATRDIKIGEQILKEAPLVLGPKVASAPL 90
            |::.|::..|:...|..:    .:.:..:::.||:|.|.|.::.||.:::|.||.:||.|:..|:
  Fly    26 SKDKQEQQDKEQSPSPTEEKELPYRVEHSDIYGRYLVANRQLEAGETLIREEPLAIGPCVSGDPV 90

  Fly    91 CLGCHRNLLAPGKPRGNYHKCSSCSWPLCGKECEDSVHH----KAECQLMSGSNFQSKINYVPGE 151
            ||||:.    |...:.:.::|..|:|||||..|....|.    :.||||      .::...|.||
  Fly    91 CLGCYH----PVSLKADQYRCPGCAWPLCGSTCAGLKHRHGHTETECQL------YAERRAVAGE 145

  Fly   152 --EERKESA-----YCVIMLLRCMHLKDKDPDAFLKLYNLEDHLKERLETP-LYQVLRANLITFI 208
              .||...|     |.::|::|.:.|:..||:.|..:..:|.|.:||.:.. |::.....::..:
  Fly   146 LLTERAGPAEVRDLYELVMIVRILLLRQHDPEQFALIARMESHTEERRQNAVLWRHYEEKVVQRL 210

  Fly   209 KTVLGMKDWPEMDILRIAAILDTNTFEVRQPRERRKIRALYPGAAMISHDCVPNMRHRFD-DDMN 272
            :....::|.....:..:..|||.|.||:.|  ...|.|.|||.|.:::|||.||..|..| ....
  Fly   211 RVTWQLEDLEAEQVHEVCGILDVNCFEIGQ--NGAKARTLYPSAFLLAHDCTPNTAHTDDPSSFE 273

  Fly   273 IVFLAKRKIAKGEILSISYTQPLRSTIQRRVHLRQAKCFDCSCARCQDPEELGSFAGAQTCLKCK 337
            |:....|::.:.|.|::||...|:.|::||..:.:.|.|.|.|.||.||.|||:...|..|..|:
  Fly   274 ILLRTSRRVREREALTLSYAYTLQGTLKRRAFMHEGKLFWCCCRRCSDPRELGTDCSALVCATCR 338

  Fly   338 AGKIISLNPLLNSAPWKCQLCNFKRSAKDVVTSDAELQQELESLDKTTPVALEEFIYRHRADLHE 402
            .|.:.:::||..:..|.|..|..|..|.:|......:..:||.:|......||.|:.|:|..|..
  Fly   339 TGSVRAVDPLQQTGDWACDRCAHKMGATEVERQLDRINNDLEDIDVHDIPGLENFLLRYRDVLRP 403

  Fly   403 TNTHILQAKYALTQLYGSAPGFAMEELSGESLNRKLQLCEELLKLADIFDGGWSIFRGNLLIDME 467
            .:..:|.|||:|.|:||...|:.:.::|.|.:.||...|.|.|::.|:.|.|.:..||.::.::.
  Fly   404 NHYLLLSAKYSLCQIYGRTEGYLLPQMSPEDIARKESYCREFLEIVDVLDPGLTRLRGLIMYELH 468

  Fly   468 E---ALVTQALRSK--DPLDCEEKLRNAAEMLREIRNIMKHEPE 506
            .   .|...|.:|.  ...:.:.:|:...::|:..|:|:..|||
  Fly   469 APVMVLAQSAFQSGQISRQEFQRRLKEVVKLLQVSRDILLMEPE 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:280009 4/15 (27%)
SET <246..291 CDD:214614 16/45 (36%)
SmydA-4NP_572675.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 60 1.000 Domainoid score I3856
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I1875
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG47470
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2203
87.980

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