DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-2 and Smyd4

DIOPT Version :9

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_001096081.1 Gene:Smyd4 / 319822 MGIID:2442796 Length:799 Species:Mus musculus


Alignment Length:597 Identity:131/597 - (21%)
Similarity:205/597 - (34%) Gaps:170/597 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 IATNEVLGRHLRATRDIKIGEQILKE----APLVLG--------------PKVASAPL-CLGCHR 96
            :.|:.:.||||.||:||..||.::||    :.|:.|              .:|.|..| |..|.:
Mouse   237 LCTHPLKGRHLVATKDILPGELLVKEDAFVSVLIPGEMPRPHHCLENKWDTRVTSGDLYCHRCLK 301

  Fly    97 NLLA--PGKPRGNYHKCSSCSW-PLCGKECED---SVHHKAECQ--------------------- 134
            :.||  |         |.|||: ..|.:||..   .::|..||.                     
Mouse   302 HTLATVP---------CGSCSYAKYCSQECMQQAWDLYHSTECSLGGLLLTLGVFCHVALRMTLL 357

  Fly   135 -----------------------LMSGSNFQSKINYV-PGEEERKE-----------------SA 158
                                   |....|.....:|. .||.|.|.                 |.
Mouse   358 ARFEDVDRVVRMLCDEVGSTDTCLPESKNLVKAFDYTSQGESEEKSKIGEPPIPGCNVNGKYGSN 422

  Fly   159 YCVIMLLRCMHLKDKDPD----------AFLKLYNLEDHLKERLETPLYQVLRANLITFIKTVLG 213
            |..|..| ..|.:...|:          |..:....:....:.|::|..:.:...|...: ||.|
Mouse   423 YNAIFSL-LPHTEKHSPEHRFICAISVSALCRQLKADSVQAQTLKSPKLKAVTPGLCADL-TVWG 485

  Fly   214 MKDWPEMDILR-----IAAILDTNTFE--VRQPRERRKIRALYPGAAMISHDCVPNMRHRFDDDM 271
            ......|..|:     |.:|..|.:.|  :...|:.|....::|..::::|.|.||....|...:
Mouse   486 AAMLRHMLQLQCNAQAITSICHTGSNESIITNSRQIRLATGIFPVVSLLNHSCRPNTSVSFTGTV 550

  Fly   272 NIVFLAKRKIAKG-EILSISYTQPLRSTI-QRRVHLRQAKCFDCSCARCQDPEELGSFAG----A 330
            ..|..|:| |||| |||........|..: :|:..|.....|||.|..|. .|.|.:.|.    |
Mouse   551 ATVRAAQR-IAKGQEILHCYGPHESRMGVAERQQRLSSQYFFDCRCGACH-AETLRAAAAPRWEA 613

  Fly   331 QTCLKCKAGKIISLNPLLNSAPWKCQLCNFKRSAKDVVTSDAELQQELESLDKTTPV-------- 387
            ..|..|:|  ::..|.:|:.:.   :.|....|...:|:...:|||::....|....        
Mouse   614 FCCKTCRA--LMQGNDVLSCSN---ESCTNSVSRDQLVSRLQDLQQQVCMAQKLLRTGKPEQAIQ 673

  Fly   388 -------ALEEFIYRHRADLHETNTHILQAKYALTQLYGSAPGF-----AMEELSGESLNRKLQL 440
                   |.|.|:......|.|....:.||...|.....||...     .:|...|.|   .:::
Mouse   674 QLLRCREAAESFLSAEHTVLGEIEDGLAQAHATLGNWLKSAAHVQKSLQVVETRHGPS---SVEI 735

  Fly   441 CEELLKLADIFDGGWSIFRGNLLIDMEEALVTQALRSKDPLDCEEKLRNAAEMLREIRNIMKHEP 505
            ..||.|||.:...|.::......|...|.::.        :.|..:    :|.:||:|       
Mouse   736 GHELFKLAQVLFNGLAVPEALSAIWKAERILL--------VHCGPE----SEEVRELR------- 781

  Fly   506 EMQQLLLERQVI 517
            ||:..||:...:
Mouse   782 EMRSCLLDSSFV 793

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:280009
SET <246..291 CDD:214614 16/45 (36%)
Smyd4NP_001096081.1 TPR_11 68..132 CDD:290150
TPR repeat 68..96 CDD:276809
TPR repeat 101..136 CDD:276809
S-adenosyl-L-methionine binding. /evidence=ECO:0000250 112..114
zf-MYND 296..335 CDD:280009 13/47 (28%)
SET <524..570 CDD:279228 16/46 (35%)