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Protein Alignment SmydA-2 and Smyd2

DIOPT Version :9

Sequence 1:	NP_649084.1	Gene:	SmydA-2 / 40075	FlyBaseID:	FBgn0036839	Length:	530	Species:	Drosophila melanogaster
Sequence 2:	NP_996733.1	Gene:	Smyd2 / 289372	RGDID:	727785	Length:	433	Species:	Rattus norvegicus

Alignment Length:	376	Identity:	84/376 - (22%)
Similarity:	144/376 - (38%)	Gaps:	70/376 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly    58 GRHLRATRDIKIGEQILKEAP-----LVLGPKVASAPLCLGCHRNLLAPGKPRGNYHKCSSCSWP 117
            ||.|||.|...:|: :|...|     |.:|.:......|......|          .||..|...
  Rat    18 GRGLRALRPFHVGD-LLFSCPAYACVLTVGERGHHCECCFARKEGL----------SKCGRCKQA 71

  Fly   118 L-CGKEC--EDSVHHKAECQLM--SGSNFQSKINYVPGEEERKESAYCVIMLLRCMHLKDKDPDA 177
            . |..||  ||...||.||..|  .|.|:.      |.|..|..:.   |:..:.||.:....:.
  Rat    72 FYCDVECQKEDWPLHKLECSSMVVFGENWN------PSETVRLTAR---ILAKQKMHPERTPSEK 127

  Fly   178 FLKLYNLEDHLKERLETPLYQVLRANLITFIKTVLGMKDWPE-MDILRIAAILDTNTFEVRQPRE 241
            .|.:...|.|| ::|:.....::::::....:......::|: ..::.:.|.::.|.|.:.....
  Rat   128 LLAVREFESHL-DKLDNEKKDLIQSDIAALHQFYSKHLEFPDHSSLVVLFAQVNCNGFTIEDEEL 191

  Fly   242 RRKIRALYPGAAMISHDCVPNMRHRFDDDMNIVFLAKRKIAKGEILSISYTQPLRSTIQRRVHLR 306
            .....|::|..|:::|.|.||:...:...:..| .|.::|..|:.:..||...|..|..|...||
  Rat   192 SHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEV-RAVQEIHPGDEVFTSYIDLLYPTEDRNDRLR 255

  Fly   307 QAKCFDCSCARCQDPEELGSFAGAQTCLKCKAGKIISLNPLLNSAPWKCQLCNFKRSAKDVV--- 368
            .:..|.|.|..|...:            |.||.  :.:..|.| .|....:.:..|.|::|:
  Rat   256 DSYFFTCECRECTTKD------------KDKAK--VEIRKLSN-PPQAEAIRDMVRYARNVIEEF 305

  Fly   369 ------TSDAELQQELE-SLDKTTPVALEEFIYRHRADLHETNTHILQAKY 412
                  .|.:||.:..| |.:|.:.|            ..::|.::|...|
  Rat   306 RRAKHYKSPSELLEICELSQEKMSSV------------FEDSNVYMLHMMY 344

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.