DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-2 and Zmynd15

DIOPT Version :10

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_001099270.1 Gene:Zmynd15 / 287457 RGDID:1309845 Length:738 Species:Rattus norvegicus


Alignment Length:221 Identity:52/221 - (23%)
Similarity:79/221 - (35%) Gaps:46/221 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 GPKVASAPLCLGCHRNLLAPGKPRGNYHKCSSCSWPLCGKECEDSVHHKAECQLMSGSNFQSKIN 146
            |.|..:|||.|.|   ||......|.          :.|.:.           ||.|:  |..:.
  Rat   190 GRKTEAAPLHLSC---LLLVTDEHGT----------ILGIDL-----------LMDGA--QGSVG 228

  Fly   147 YVPGEEERKESAYCVIMLLRCMHLKDKDPDAFLKLYNLEDHLKERLETPLYQVLRANLITFIKTV 211
            ..||.|.....||.::.......:...||....:|...:.||...||:   .|.|.. :...|| 
  Rat   229 QSPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHRELES---LVPRLG-VKLAKT- 288

  Fly   212 LGMKDW---PEMDILRIAA----ILDTNTFEVRQPRERRKIRALYPGAAMISHD---CVPNMRHR 266
             .|:.|   |......:.|    :...::|||:.....:....||.|.|.:..|   |..::.||
  Rat   289 -PMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADWRRCPDDVSHR 352

  Fly   267 FDDDMNIVFLAKRKIAKGEILSISYT 292
            |.......|:.:    .||:.|:.:|
  Rat   353 FWCPRLAAFMER----AGELASLPFT 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997 18/73 (25%)
Zmynd15NP_001099270.1 zf-MYND 309..355 CDD:460312 12/45 (27%)
MSS51_C 480..674 CDD:466330
Blue background indicates that the domain is not in the aligned region.

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