DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-2 and set5

DIOPT Version :10

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_588413.1 Gene:set5 / 2538853 PomBaseID:SPCC1739.05 Length:319 Species:Schizosaccharomyces pombe


Alignment Length:241 Identity:55/241 - (22%)
Similarity:90/241 - (37%) Gaps:64/241 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 ETPLYQVL-----RANLITFIKTVLGMKDWPEMDILR-------IAAILDTNTFEVRQPRERRKI 245
            ||.:|:|:     ...:|..:|..:|.:.:.|..::|       |...|.|.|.| .|....|..
pombe     5 ETEIYKVVPIPNKGMGMIAKVKIPVGTRIFAETPLIRTKSDAKEIEEALSTKTKE-EQEAFHRLF 68

  Fly   246 RA-----------LYPGAAMI--------------SHDCVPNMRHRFDDDMNIVFL-AKRKIAKG 284
            .|           .|..|..|              :|||.||::|.::..::.|.: |.|.|..|
pombe    69 NAHPDTMGPFLGPFYSNALTIDETKGGMFLLGSRMNHDCSPNVKHTWNPRLDQVTVHAVRDIEAG 133

  Fly   285 EILSISYTQPLRSTIQRRVHLRQAKCFDCSCARCQDPEELGSFAGAQTCLKCKAGKIISLNPLLN 349
            |.:..:|....:|..:|:..|.:...|.|.|:.|...|.             |..||..|.    
pombe   134 EEILTTYIDLHKSHTERQKILLEHFGFKCYCSVCSVEER-------------KIRKISDLR---- 181

  Fly   350 SAPWKCQLCNFKRS-AKDVVTSDAELQQELESLDKTTPVALEEFIY 394
                :.||..:.|: ||..:.:.   :..|.:|.....:|.||.::
pombe   182 ----RKQLAYYDRTMAKMCIVNP---RGALRALRHRIHIAHEELLF 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997 29/116 (25%)
set5NP_588413.1 SET_SMYD 17..167 CDD:380997 35/150 (23%)
Blue background indicates that the domain is not in the aligned region.

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