DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3808 and Trmt2b

DIOPT Version :10

Sequence 1:NP_649083.2 Gene:CG3808 / 40074 FlyBaseID:FBgn0036838 Length:615 Species:Drosophila melanogaster
Sequence 2:XP_017457841.1 Gene:Trmt2b / 503462 RGDID:1565132 Length:490 Species:Rattus norvegicus


Alignment Length:462 Identity:154/462 - (33%)
Similarity:236/462 - (51%) Gaps:39/462 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 ASADPLQKKRAAEEQESERKPKKQRTAVEATCPLSHIAYDQQIKQKSEEMSAL---LAKYTQELR 195
            |...|:.:|...:::........|....:|..|...:.|::|:|.|.|....:   |..|.|.|.
  Rat    48 AKKHPIGQKYQKKQRHCRPDDSWQERLADAVTPFWRLRYEEQLKVKFEAQKKILQSLESYLQVLH 112

  Fly   196 KVNPRAKPHLDKFQ-----FHEVLPSPTVNGYRNKNEFTVGKNSVGE-VVVGFRLGCYSDGSVEV 254
            .|:  |...:.:.:     .|.::||||..||.||:.|:|.::..|. ..||:.||.:.||:...
  Rat   113 GVS--ATVAVSQSEGLCCLLHPIMPSPTTTGYXNKSTFSVNQSPDGNPKTVGYYLGTWRDGNAIC 175

  Fly   255 AEVADLPHLPEQAKWAARSFQDLVRKSKFLP---FNPDGNIGHFRQLMVRCSSATGELMLVAGIY 316
            .....|.::|::....|..::..:.:|...|   |: :|  ||:|:|:|| :...|..|.:...:
  Rat   176 VPCNHLKNIPDKHSQVAXYYEVFLXQSSVEPCLLFH-EG--GHWRELIVR-TYKPGHTMAIVTFH 236

  Fly   317 SSNLSEDEQVELKQELKSFYEDLANDAPYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQ 381
            ...||::|....|..||.| ......|..:.:|||:|:..........:|...:.|..:|.:.:.
  Rat   237 PQGLSQEELCVQKVTLKDF-SAKGPGAVCELTSLYFQESTMTRCSHQQSPYXLLFGEPYIFEDLL 300

  Fly   382 GLQFRISPLAFFQINTEGANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIV 446
            ||:.:|||.|||||||.||.:|||...:|.....|:.:||.||||||:.|..|   .:|.|.|:|
  Rat   301 GLKIQISPDAFFQINTAGAEILYQIIRELRRVNSDSILLDTCCGTGTLWLDVA---SQVHGFELV 362

  Fly   447 PDAIKDAEFNAEANGIKNAKFFTGNAD----DFIKSMVREALYDQEPGKPLDLIAVVDPPRAGLH 507
            ..|::||.::|..||:.|.:|..|.|:    ..:||...|.|          .:|||:|.||||:
  Rat   363 EQAVEDARWSAAFNGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARAGLY 417

  Fly   508 HRSIAAIRSADAINRLVYVSCN-PHSAKRNFIELARP--ESKQYKGEPFYPKSAVAVDMFPHTMH 569
            ||.:.|:|:..||:.||:||.. |..:.||||||..|  .:|:...:.|..:.||.||.||||.|
  Rat   418 HRVVRAVRNCRAIHTLVFVSGKPPGESTRNFIELCCPPNSAKKLLSDAFILREAVCVDXFPHTPH 482

  Fly   570 TELVILF 576
            .|||:||
  Rat   483 CELVVLF 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3808NP_649083.2 RRM_TRMT2A 56..134 CDD:409873 154/462 (33%)
TrmA 165..577 CDD:441866 149/431 (35%)
Trmt2bXP_017457841.1 TrmA 78..490 CDD:441866 149/432 (34%)

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