DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3808 and trmt2b

DIOPT Version :9

Sequence 1:NP_649083.2 Gene:CG3808 / 40074 FlyBaseID:FBgn0036838 Length:615 Species:Drosophila melanogaster
Sequence 2:XP_002939250.2 Gene:trmt2b / 100495482 XenbaseID:XB-GENE-992779 Length:479 Species:Xenopus tropicalis


Alignment Length:478 Identity:155/478 - (32%)
Similarity:249/478 - (52%) Gaps:51/478 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 AHVAKASADPLQKKRAAEEQESERKPKK-----------QRTAVEATCPLSHIAYDQQIKQKSEE 182
            :|....|.:.:.:.:.......::|.||           :|.:..|| ||..:.|.:|::.|...
 Frog    25 SHTQLGSTNSISQTQQRCRNLKDKKKKKPVPFNPGASWEERLSDVAT-PLWRMGYKEQLEYKLNA 88

  Fly   183 MSALLAKYTQELRKVNPRAKPHLDKF-QFHEVLPSPTVNGYRNKNEFTVGKNSVGE-VVVGFRLG 245
            :.:.|...|..:|....:.......| ...:::|||.:||||||:.|:|.:...|: ..||..:|
 Frog    89 LRSTLRDITIHVRARGGKVVDCDGLFCPLQDIIPSPVMNGYRNKSSFSVNRGPDGDPKTVGNFVG 153

  Fly   246 CYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFLPFNP-----DGNIGHFRQLMVRCSSA 305
            ...|.::.......|.::||:.|..||.::|.:.:|   |..|     ||  ||:|.::|| ::.
 Frog   154 TGRDRNIVCVRADHLINIPEKHKHVARCYEDFIHQS---PLAPCLLFYDG--GHWRDVVVR-TNK 212

  Fly   306 TGELMLVAGIYSSNLSEDEQVELKQELKSFYEDLANDAPYKCSSLYYQDVKHREAGQTINPVEH- 369
            .||.|.:...:..:|.::|.:...|.||.::.. ...:....:|||||:         .||..| 
 Frog   213 KGETMAIVTFHPQDLPQNEVLSHIQSLKDYFTQ-GPGSECNLTSLYYQE---------NNPKTHQ 267

  Fly   370 ------ISGSTHITDTIQGLQFRISPLAFFQINTEGANVLYQKAIDLVAPTKDTTMLDICCGTGT 428
                  :.||.|:|:.:..|:.|:||.:|.|:||..|..||....:::......|:||:|||||.
 Frog   268 PSPPRLLYGSPHLTEQVLDLRLRVSPTSFLQVNTPAAETLYTALGNMIQRHAHGTLLDLCCGTGA 332

  Fly   429 ITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKSMVREALYDQEPGKPL 493
            |.|:.|.:.|.|:|||:|.||:.||.:||:.|||:|.:|.:|.|:..:.:::.   |.|   |.|
 Frog   333 IGLSLAGYFKNVIGVEMVEDAVLDARWNADFNGIENCQFLSGRAEKLLPNLLS---YKQ---KEL 391

  Fly   494 DLIAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPH-SAKRNFIELARPESKQYK--GEPFYP 555
            .::||.:|||||||.|.:.|:|:.:.|..|::|:|.|. .|.||..||....|.:.|  ||.|.|
 Frog   392 SVLAVANPPRAGLHPRVVRALRNCEDIRTLLFVTCKPEGEATRNLTELCCAPSLEQKILGEAFVP 456

  Fly   556 KSAVAVDMFPHTMHTELVILFER 578
            :.|:.||:||||.|.||.:|..|
 Frog   457 QEALGVDLFPHTTHCELALLLTR 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3808NP_649083.2 RRM_TRMT2A 56..134 CDD:240885 1/4 (25%)
TrmA 57..571 CDD:225174 151/469 (32%)
AdoMet_MTases 276..579 CDD:302624 116/318 (36%)
trmt2bXP_002939250.2 TrmA 78..472 CDD:225174 141/415 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D248059at2759
OrthoFinder 1 1.000 - - FOG0001356
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.