DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18135 and GDPD6

DIOPT Version :10

Sequence 1:NP_788526.1 Gene:CG18135 / 40073 FlyBaseID:FBgn0036837 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001331075.1 Gene:GDPD6 / 830697 AraportID:AT5G08030 Length:387 Species:Arabidopsis thaliana


Alignment Length:314 Identity:74/314 - (23%)
Similarity:115/314 - (36%) Gaps:79/314 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 LEC-----YSMSNELLGSATLVTSDLTGSEGVLHLPIKSAKNADETLARLRLPYVAVQPYRYSPL 437
            ::|     :|.||.::....|:.        :|.|.:..|..|...|  .|||..|....: .||
plant     1 MQCGRWRNFSSSNSVMAFKYLLP--------LLLLSLLVANCASRPL--YRLPSEAKHATK-KPL 54

  Fly   438 DFKNTYAHYWPKSWPNLDVGHRG-NGKSYIADAPAERENTIASFLSAHEHHADMIELDVHLTADG 501
            .....|           ::.||| ||     :.|   |.|..:::.|.|..||.||.|:..:.||
plant    55 QTSRPY-----------NLAHRGSNG-----ELP---EETAPAYMRAIEEGADFIETDILSSKDG 100

  Fly   502 VPVIYHDFGL-RTAPPGKQISRPDQLEYVLIKDINYE-------LLKRLRIFSVIAGQVREYPSH 558
            |.:.:||..| .|..........|:.....::.:|..       .||.|:..    |..:.||..
plant   101 VLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLKELKTL----GAKQRYPFR 161

  Fly   559 NAEPRMEHRI--FPTLVEVLEKLPKSLGIDVEIKWP-----QRRQGGGSEAEQTIDKNFFADKVI 616
            :.:...:..|  |...:.:....|:.:||..|||.|     |.:...|.:         |.||.:
plant   162 DQQYNGKFPIITFDEYISIALDAPRVVGIYPEIKNPVFMNQQVKWADGKK---------FEDKFV 217

  Fly   617 HQVIQKG----------CGRPIIFSSFDADMCTMLRFKQNV--FPVMFLTQGET 658
            ..:.:.|          ..:||...||.|   |.|.:..|:  .|.:||....|
plant   218 ETLKKYGYKGSYLSEDWLKQPIFIQSFAA---TSLVYISNMTDSPKLFLIDDVT 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18135NP_788526.1 CBM20_Prei4 166..288 CDD:99888
GDPD_GDE5 454..741 CDD:176549 57/233 (24%)
GDPD6NP_001331075.1 GDPD_ScGlpQ1_like 59..370 CDD:176544 58/245 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.