DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18135 and Gdpd1

DIOPT Version :9

Sequence 1:NP_788526.1 Gene:CG18135 / 40073 FlyBaseID:FBgn0036837 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_079914.1 Gene:Gdpd1 / 66569 MGIID:1913819 Length:314 Species:Mus musculus


Alignment Length:209 Identity:51/209 - (24%)
Similarity:83/209 - (39%) Gaps:57/209 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 VGHRGNGKSYIADAPAERENTIASFLSAHEHHADMIELDVHLTADGVPVIYHDFGLRTAPPGKQI 520
            :.|||.       |....|||:|:|..|.....||:|||.|:|.|...|:.||..|:.: .|..:
Mouse    43 ISHRGG-------AGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRS-TGVNV 99

  Fly   521 SRPD----QLEYVLIK-DINYELLKRLRIFSVIAGQVREYPSHNAEPRMEHRIFPTLVEVLEKLP 580
            :..|    :|...|.| |:.::               |.......:.|:     |.|.||.|..|
Mouse   100 NVSDLKYCELPPYLCKLDVPFQ---------------RACKCEGKDTRI-----PLLKEVFEAFP 144

  Fly   581 KSLGIDVEIKWPQRRQGGGSEAEQTIDKNFFADKVIHQVIQKGCGRPIIFSSFDA---DMCTMLR 642
            :: .|:::||               ::.|....||...|.|.......::.:.::   |.|    
Mouse   145 ET-PINIDIK---------------VNNNVLIKKVSELVKQYKREHLTVWGNANSEIVDKC---- 189

  Fly   643 FKQNV-FPVMFLTQ 655
            :|:|. .|::|..|
Mouse   190 YKENSDIPILFSLQ 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18135NP_788526.1 CBM20_Prei4 166..288 CDD:99888
GDPD_GDE5 454..741 CDD:176549 51/209 (24%)
GDPD 458..744 CDD:281062 51/207 (25%)
Gdpd1NP_079914.1 GDPD_GDE4 14..311 CDD:176553 51/209 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0584
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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