DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18135 and gdpd3b

DIOPT Version :9

Sequence 1:NP_788526.1 Gene:CG18135 / 40073 FlyBaseID:FBgn0036837 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_017213986.2 Gene:gdpd3b / 567286 ZFINID:ZDB-GENE-121210-2 Length:320 Species:Danio rerio


Alignment Length:239 Identity:60/239 - (25%)
Similarity:97/239 - (40%) Gaps:62/239 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   418 TLARLRLPYVAVQPYRYSPLDFKNTYAHYWPKSWPNLDVGHRGNGKSYIADAPAERENTIASFLS 482
            :|..||.|.:.   ::...|:|   |..:         :.|||.....|       |||:.:|..
Zfish    21 SLFLLRYPLIL---HKRKRLEF---YCRH---------ISHRGGSGERI-------ENTMEAFTH 63

  Fly   483 AHEHHADMIELDVHLTADGVPVIYHDFG-LRTAPPGKQISRPDQLEYVLIKDIN-YELLKRLRIF 545
            |.....||:|:|.|||.||..|:.||.. ||.....|.:|   .|::   :|:. ||  ::|   
Zfish    64 AVSAGTDMLEMDCHLTLDGYVVVSHDNNLLRQTGDDKTVS---SLKF---QDLPLYE--EKL--- 117

  Fly   546 SVIAGQVREYPSHNAEPRMEHRIFPTLVEVLEKLPKSLGIDVEIKWPQRRQGGGSEAEQTIDKNF 610
                 :|..|..|.:..:  .|.|..|..||:..| ::.:.:|||                :.|.
Zfish   118 -----EVTFYVGHYSTGK--DRRFVLLENVLKNFP-NMPMTLEIK----------------ENND 158

  Fly   611 FADKVIHQVIQK-GCGRPIIFSSFDADMCTMLRFKQN-VFPVMF 652
            ...|.:..::.| |.....:::|.:.::.... .||| ..|.||
Zfish   159 LLIKKVSNLVHKYGREHITVWASEEHEVMAKC-LKQNPSMPYMF 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18135NP_788526.1 CBM20_Prei4 166..288 CDD:99888
GDPD_GDE5 454..741 CDD:176549 53/203 (26%)
GDPD 458..744 CDD:281062 53/199 (27%)
gdpd3bXP_017213986.2 GDPD_GDE4 17..312 CDD:176553 60/239 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0584
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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