DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18135 and gdpd5b

DIOPT Version :9

Sequence 1:NP_788526.1 Gene:CG18135 / 40073 FlyBaseID:FBgn0036837 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_005157799.1 Gene:gdpd5b / 560645 ZFINID:ZDB-GENE-030131-6028 Length:584 Species:Danio rerio


Alignment Length:73 Identity:23/73 - (31%)
Similarity:35/73 - (47%) Gaps:9/73 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 VGHRGNGKSYIADAP-AERENTIASFLSAHEHHADMIELDVHLTADGVPVIYHDFGLRTAPPGKQ 519
            :||:|        || ...|||:.||..|.:.:...:|.||.::.||||.:..|..||.....::
Zfish   231 IGHQG--------APMLAPENTLLSFNRALQRNVSGLETDVTISLDGVPFLMRDRTLRRTTNVRR 287

  Fly   520 ISRPDQLE 527
            :....|.|
Zfish   288 VFPERQYE 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18135NP_788526.1 CBM20_Prei4 166..288 CDD:99888
GDPD_GDE5 454..741 CDD:176549 23/73 (32%)
GDPD 458..744 CDD:281062 22/71 (31%)
gdpd5bXP_005157799.1 ESSS <23..74 CDD:301731
GDPD_GDE2 227..582 CDD:176550 23/73 (32%)
GDPD 233..460 CDD:281062 22/71 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0584
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.